Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32290 320 / 3e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25330 309 / 2e-103 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G52060 223 / 4e-70 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G22070 209 / 2e-64 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G31350 135 / 3e-36 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G57270 129 / 4e-34 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G25870 124 / 3e-32 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 121 / 5e-31 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 120 / 2e-30 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 120 / 2e-30 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001503 [exp] 540 / 0 AT4G32290 382 / 7e-132 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10028866 [exp] 229 / 5e-72 AT3G52060 393 / 1e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10008954 [exp] 227 / 2e-71 AT3G52060 400 / 2e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10004106 [exp] 227 / 6e-71 AT5G22070 486 / 3e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025464 [exp] 134 / 8e-36 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10006952 [exp] 132 / 8e-35 AT2G19160 503 / 9e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036774 [exp] 130 / 3e-34 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005108 [exp] 123 / 2e-32 AT1G10880 330 / 4e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10003499 [exp] 120 / 2e-30 AT3G21310 503 / 3e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018600 [exp] 229 / 1e-72 AT3G52060 407 / 2e-142 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G254800 [exp] 221 / 4e-70 AT4G32290 210 / 1e-65 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G242900 [exp] 223 / 5e-70 AT3G52060 407 / 9e-143 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G215400 [exp] 216 / 8e-67 AT5G22070 421 / 1e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G017300 [exp] 214 / 3e-66 AT5G22070 418 / 7e-146 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 125 / 1e-32 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 123 / 1e-31 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 122 / 3e-31 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 122 / 3e-31 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 121 / 6e-31 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10002919 pacid=23148598 polypeptide=Lus10002919 locus=Lus10002919.g ID=Lus10002919.BGIv1.0 annot-version=v1.0 ATGCTTTCCCCAACTCCTTTCTCTCTCTTCTGCACTCTCCTCCTCTGCTTACCCCTCGCCGTCTTTTTCACCGTCACCACTCCGACCACCACCATCCTCC ATTCCTCAGCTCCCCGCATCGTCCTCCCGACGGATGACGACGCCCTCCTCCGACTCGCCTCCCGGGTCAACCCGAATCCGAACCCGAACCAACCGAAAAA ATTAGCCTTTCTCTTCCTTACCACAACTCCTCTGCCCTTCGCTCCGCTATGGGAACTCTTCTTCAACAGAAGCGAATCGAAAAAGGACGGTGAAGCACTG TATAATGTGTATGTTCACGCCGACCCGACTCGGATATACTACCCGGGGTTCGCTGGTGTGTTTTCCGGTCGGGTTGTTCACTCCAAGCCCACGAAACGTT TCAGCCCGAGTCTAATATCGGCTGCCAGACGCTTACTCGCGCATGCGCTGCTCGAGGACTCGTCGAACGCTGTTTTTGTGCTTCTATCTGCTTCCTGTGT ACCTCTGCACTCGTTTGGGTTTACTTACCGGACGCTGACCGGGTCGGGGAAGAGCTTCATCGAGATTCTGGCAAACGAGACGGGGGCGCGTGGTCGGTGG ATGGCACGTGGGGAGGACGCGATGCTTCCTGAGGTGACGATGGAGGATTTCCGGATCGGGTCGCAGTTCTGGGCGCTGACACGTAAGCATGCGAGGATGG TGGTGGAGGACCGCAGGATATGGCCTAAGTTCAATCGGACGTGCGTGAGGGTGGACACGTGTTACCCGGAGGAGAATTACTTCCCGACGCTTATCCATAT GGTGGACCCGCAGGGGGCCACGTCGGCGACGCTGACACACGTGGACTGGAGGGGGAGATTCGACGGGCATCCGCGGATGTATAAGAAGGAGGAGGTGGGT CGTGGGTTGATTGTAGCGTTGAGGAATAGACGGCCTAGATATGGTTACGAGATGATGATGATGAACGGCTCGGATTCCTCGGTGGTGGAGGGACGGCGGG GGGACCCGTTCTTGTTTGCGAGGAAGTTCTCAGCGGAGGCGATTGGGCCGCTGTTGGAGATTGCGGAGGAGGCAATCCTGAGGGATTGA
AA sequence Show only first row Show all	>Lus10002919 pacid=23148598 polypeptide=Lus10002919 locus=Lus10002919.g ID=Lus10002919.BGIv1.0 annot-version=v1.0 MLSPTPFSLFCTLLLCLPLAVFFTVTTPTTTILHSSAPRIVLPTDDDALLRLASRVNPNPNPNQPKKLAFLFLTTTPLPFAPLWELFFNRSESKKDGEAL YNVYVHADPTRIYYPGFAGVFSGRVVHSKPTKRFSPSLISAARRLLAHALLEDSSNAVFVLLSASCVPLHSFGFTYRTLTGSGKSFIEILANETGARGRW MARGEDAMLPEVTMEDFRIGSQFWALTRKHARMVVEDRRIWPKFNRTCVRVDTCYPEENYFPTLIHMVDPQGATSATLTHVDWRGRFDGHPRMYKKEEVG RGLIVALRNRRPRYGYEMMMMNGSDSSVVEGRRGDPFLFARKFSAEAIGPLLEIAEEAILRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	0	1
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	2.4	0.8846
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	3.2	0.8769
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	6.0	0.8455
					Lus10029097 [exp]	8.0	0.8359
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10008969 [exp]	10.4	0.8512
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	11.7	0.8347
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	13.4	0.8336
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	18.3	0.8096
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	18.5	0.8548
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001604 [exp]	22.0	0.8497

Compare expression of checked genes

Lus10002919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.