Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25430 817 / 0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 816 / 0 ENTH/ANTH/VHS superfamily protein (.1.2) AT1G03050 465 / 4e-157 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 290 / 5e-89 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 264 / 2e-79 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 213 / 1e-60 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 150 / 1e-38 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 150 / 2e-38 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 147 / 5e-37 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 137 / 4e-34 ENTH/ANTH/VHS superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001502 [exp] 1103 / 0 AT2G25430 914 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10019402 [exp] 572 / 0 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Lus10043260 [exp] 486 / 1e-165 AT4G32285 506 / 2e-173 ENTH/ANTH/VHS superfamily protein (.1.2) Lus10035340 [exp] 302 / 1e-92 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10020824 [exp] 270 / 1e-81 AT1G03050 636 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 260 / 2e-74 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 223 / 2e-64 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10012686 [exp] 207 / 2e-58 AT1G03050 642 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 205 / 4e-57 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026900 [exp] 893 / 0 AT2G25430 857 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G255000 [exp] 891 / 0 AT2G25430 866 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) Potri.006G066900 [exp] 664 / 0 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.018G128200 [exp] 641 / 0 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 469 / 1e-158 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 244 / 2e-72 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 187 / 4e-51 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.014G158600 [exp] 179 / 3e-48 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 154 / 9e-40 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 154 / 1e-39 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10002920 pacid=23148614 polypeptide=Lus10002920 locus=Lus10002920.g ID=Lus10002920.BGIv1.0 annot-version=v1.0 ATGGCGCCGAGCACGATCCGGAAGGCGATCGGGACGGTGAAGGATCAGACCAGCATCGGACTGGCCAAAGTGGCGAGCAACATGGCACCGGAGCTGGAAG TAGCGATCGTGAAAGCTACCAGCCACGACGACGACCCTGCTAGCGAGAAATACATACGCGAGATCTTGAACTTGACCTCTTACTCGAGAGGATACGTCCA CGCTTGTGTAGCTGCTGTTTCGAAGCGGCTGGGGAAGACTCGGGACTGGATCGTGGCTCTGAAAGCGCTCATGCTCGTCCACCGCCTCCTCAATGAAGGA GATCCGCTCTTCCAGGAGGAGATCCTGTACGCTACAAGGAGAGGGACGAGGCTGCTGAACATGTCGGATTTCAGGGACGAGGCGCATTCTAGCTCGTGGG ATCATTCCGCTTTCGTTAGGACTTACGCTATGTTCCTGGATCAGCGGCTTGAGCTTGTTTTGTTCGACAGGAAAGGAGCCGTCTCCTCCTCCGGTGCGGG GAGTGCACACGGAGGAGAGATCGAGAGGTATGGAGCGAGAGGGGATTTCAGATCTCCGCCGCCGAGGCCGTACGAGTACAGCGACTATGGCGATCATAGG GGAGCAACCGAGTCTGGATTTGGGAATGGGAATCCTGGAATGACTAGGAGGTCTAGGTCATTTGGAGACATGAGCGAGGCAGCTGGGAGGGAAGGCTCCG TAAAGGCAATTACTCCGCTTAGAGAGATGAAGCCGGAGAGGATCTTCGGTAAGATGGCACATTTGCAGAAGCTATTGGATCGGTTTCTGTCTTGCAGGCC TACAGGGCTGGCGAAAACAAGCCGGCTGATACTGCTTGCGGTTTACCTTGTTGTGAAGGAGAGTTTCCAGTTGTATGCTGATATATGCGAGGTTTTAGCT GTGTTGCTTGATAAATTCTTCGATATGGAGTACCCAGATTGTGTCAAGGCATTAGATGCCTATGCTGGCGCTGCTAAACAGATCGACGAGCTTATTGCCT TCTACAACTGGTGTAAAGACACTGGGATAGCTAGATCTTCAGAATATCCAGAGGTGCAAAGAATTACTGGCAAATTACTCGAGACATTGGAGGAATTCGT CAGGGACAGAGCAAAAAGACCCAAGAGTCCCGAGAGGATAGAGGCGGCACCTCCACCAGAACCAGAGCCTGTTCCTGATATGAATGAAATCAAAGCACTG CCCGCGCCAGAGACTCCGGCACCACCTCCCCCACCAGAACCAGAGCCAGAGCCTGCTAAGCCACAGTACACTGAAGATCTGGTCAATTTGAGGGAGGATA ATGTAAGTGCAGACGACCAAGGAAACAGATTTGCATTAGCTTTGTTTGCAGGTCCAGCTGCAAACAAAGCCAACGGTTCATGGGAGGCATTCCCATCCAA TGGAGGAAACCCCGAAGTGACCTCAGCTTGGCAGACACCAGCTGCTGAGCTAGGTAAAGCAGATTGGGAACTCGCCCTTGTCGAGACCGCCAGTAACTTA TCGAACCAGAAAGCAGCAATGGGAGGCGGCCTCGACCCACTACTCTTAAACGGAATGTACGATCAGGGAATGGTGAGGCAACATGTCAGCACCTCACAAT TGAGCGGAGGGAGTGCTTCTAGTGTTGCATTGCCCGGTCCAGCAGGGAAGACCAATACCCCAGTGTTGGCCCTCCCTGCACCAGATGGAACAGTTCAACC CGTGAATCAGGACCCTTTCGCAGCATCTTTGACAGTTCCACCTCCCGCCTACGTACAAATGGCTGATATGGAGAAGAAACAACACTTGCTTGTACAGGAA CAAGTGGTGTGGGAGCAGTATGCTAGGAGTGGGATGCAAGGGCAAAGTAGCTTGTCCAGGATCAATGGACCGATGCCGTATCAATATGGGATGCCGATGC AGCCTCCGGTAAATGGAATGGGAACACCCGCCGGGTACTATTATACTCCTCCTTACTGA
AA sequence Show only first row Show all	>Lus10002920 pacid=23148614 polypeptide=Lus10002920 locus=Lus10002920.g ID=Lus10002920.BGIv1.0 annot-version=v1.0 MAPSTIRKAIGTVKDQTSIGLAKVASNMAPELEVAIVKATSHDDDPASEKYIREILNLTSYSRGYVHACVAAVSKRLGKTRDWIVALKALMLVHRLLNEG DPLFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMFLDQRLELVLFDRKGAVSSSGAGSAHGGEIERYGARGDFRSPPPRPYEYSDYGDHR GATESGFGNGNPGMTRRSRSFGDMSEAAGREGSVKAITPLREMKPERIFGKMAHLQKLLDRFLSCRPTGLAKTSRLILLAVYLVVKESFQLYADICEVLA VLLDKFFDMEYPDCVKALDAYAGAAKQIDELIAFYNWCKDTGIARSSEYPEVQRITGKLLETLEEFVRDRAKRPKSPERIEAAPPPEPEPVPDMNEIKAL PAPETPAPPPPPEPEPEPAKPQYTEDLVNLREDNVSADDQGNRFALALFAGPAANKANGSWEAFPSNGGNPEVTSAWQTPAAELGKADWELALVETASNL SNQKAAMGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPAGKTNTPVLALPAPDGTVQPVNQDPFAASLTVPPPAYVQMADMEKKQHLLVQE QVVWEQYARSGMQGQSSLSRINGPMPYQYGMPMQPPVNGMGTPAGYYYTPPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	0	1
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	2.0	0.9394
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	2.2	0.9347
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	2.4	0.9385
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	3.5	0.9353
AT5G21070			unknown protein		Lus10026764 [exp]	3.9	0.9090
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10019477 [exp]	4.6	0.9267
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	4.6	0.9050
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	4.6	0.9377
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	5.7	0.9184
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	6.9	0.9267

Compare expression of checked genes

Lus10002920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.