Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35530 79 / 4e-18 phosphatidylinositolglycan-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001500 [exp] 0 / 1 ND 62 / 3e-17
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026700 [exp] 90 / 2e-22 AT4G35530 194 / 2e-63 phosphatidylinositolglycan-related (.1) Potri.006G255301 [exp] 81 / 4e-19 AT4G35530 162 / 3e-51 phosphatidylinositolglycan-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10181 [flax] [poplar] PIG-H GPI-GlcNAc transferase complex, PIG-H component
Representative CDS sequence Show only first row Show all	>Lus10002922 pacid=23148593 polypeptide=Lus10002922 locus=Lus10002922.g ID=Lus10002922.BGIv1.0 annot-version=v1.0 ATGACAGCTGAACTTAACGTTTTTCAAAAGTTAACGGAGGAGAGGCGGTACGGTGCGGACAGGTGCATATTAACAGGCCCAATAGATGGTAAATCGGCCC AAATAAGCGGACCCACTTCTTCTATCTCGTCATGTACTAGCTTGCAGCTCACAATCTCGATCGCCGAGACTGAGACGCCGCCGCCGTCGATAGTTGCTCA GCTTAGCCGTCCGTCCGTCCGTCAACCGCCTTCCACTGACGGCTATTTCAGCTCCGAAGAAATCCTTTCTTATCCAGGAGCCATTATCGAAAAGCTTCCA GCTTGGTGCTTCAGAGTCCATTCCCCGTCTGATCTCTCAGCTTGGAAACAGTCTCATTCCGATTTGTGTCTTCTTAGATTGGAGTCGGTCCTGATCATGC CAGGTTTCGGAGTTCAACTCGAAACACATTATAGAAGCGGAAGAATATTACGCCAATTTGTTCCAGTGAGCAAGATTCTGAAGCCGGTGCTGCTAGAGCG AGTGACTCCAGTCACTTGTTACTGGATTCTATGTTTGATTCTACGGGAGGGAGCTGCATCCACCATTGAAGATGCTGGTTCCTATATGGAAGGCATTGTG CTGTGTATCTGGAGACAAAGATTAAATGGCAGTATGGTAGTCTCTTCATAG
AA sequence Show only first row Show all	>Lus10002922 pacid=23148593 polypeptide=Lus10002922 locus=Lus10002922.g ID=Lus10002922.BGIv1.0 annot-version=v1.0 MTAELNVFQKLTEERRYGADRCILTGPIDGKSAQISGPTSSISSCTSLQLTISIAETETPPPSIVAQLSRPSVRQPPSTDGYFSSEEILSYPGAIIEKLP AWCFRVHSPSDLSAWKQSHSDLCLLRLESVLIMPGFGVQLETHYRSGRILRQFVPVSKILKPVLLERVTPVTCYWILCLILREGAASTIEDAGSYMEGIV LCIWRQRLNGSMVVSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35530			phosphatidylinositolglycan-rel...		Lus10002922 [exp]	0	1
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	12.5	0.8473
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	19.0	0.8485
					Lus10016322 [exp]	22.6	0.8203
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Lus10000321 [exp]	25.6	0.8042
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014794 [exp]	33.4	0.8417
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	37.7	0.8380
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042207 [exp]	38.1	0.8140
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	38.2	0.8110
AT2G47020			Peptide chain release factor 1...		Lus10009980 [exp]	43.0	0.8215
AT4G26240			unknown protein		Lus10032703 [exp]	47.7	0.8165

Compare expression of checked genes

Lus10002922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.