Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11160 317 / 7e-112 APT5 adenine phosphoribosyltransferase 5 (.1) AT1G80050 302 / 5e-106 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1) AT4G12440 272 / 3e-94 APT4 adenine phosphoribosyl transferase 4 (.1.2) AT4G22570 265 / 3e-91 APT3 adenine phosphoribosyl transferase 3 (.1) AT1G27450 254 / 3e-87 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001497 [exp] 392 / 3e-141 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1) Lus10024612 [exp] 266 / 1e-91 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1) Lus10004344 [exp] 265 / 3e-91 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1) Lus10032249 [exp] 262 / 5e-90 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2) Lus10018695 [exp] 256 / 1e-87 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3) Lus10007757 [exp] 256 / 1e-87 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026200 [exp] 329 / 1e-116 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1) Potri.006G255900 [exp] 327 / 1e-115 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1) Potri.001G121400 [exp] 267 / 3e-92 AT4G22570 298 / 9e-105 adenine phosphoribosyl transferase 3 (.1) Potri.014G017200 [exp] 252 / 3e-85 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10002924 pacid=23148606 polypeptide=Lus10002924 locus=Lus10002924.g ID=Lus10002924.BGIv1.0 annot-version=v1.0 ATGTTTGCAGCAGAGAATGGTCTCAAGGGAGACCCAAGGCTTGAAGCTATCTCCCAAGCCATCAGGGTTGTTCCTAACTTCCCAAAGAAAGGTATAATGT TTCAAGATATAACCACCCTTCTGCTGGATCATAAAGCGTTCAAAGACACGGTTGATATCTTCGTTGATCGTTACAGAAACATGGACATCTCTGTTGTTGC TGGTGTTGAAGCTAGAGGTTTCATGTTTGGTCCTTCCATAGCCTTAGCCATTGGAGCCAAGTTTGTTCCTTTAAGGAAACCCAGAAAGCTACCTGGCAAA GTAATCTGCGAATCGTACGAGCTGGAGTACGGGACTGATTGCCTGGAGATGCAGGTGGATGCTGTTCAGTCAGGGGATCGCGCATTGATCATCGACGATC TAGTAGCTACAGGAGGAACCCTTTCGGCTGCAATAAGACTGTTGGAACGAATGGGGGCGCAAGTCGTGGAATGTGGATGTGTGATTGGGTTGCCTGAAGT CAAGGGGCAGAGTGCTCTGAATGGGAAGCCTGTCTATATCCTCGTCGAGCCACGAGACATTGACGAATTGCCGATGAGGCGTATTGCAGCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10002924 pacid=23148606 polypeptide=Lus10002924 locus=Lus10002924.g ID=Lus10002924.BGIv1.0 annot-version=v1.0 MFAAENGLKGDPRLEAISQAIRVVPNFPKKGIMFQDITTLLLDHKAFKDTVDIFVDRYRNMDISVVAGVEARGFMFGPSIALAIGAKFVPLRKPRKLPGK VICESYELEYGTDCLEMQVDAVQSGDRALIIDDLVATGGTLSAAIRLLERMGAQVVECGCVIGLPEVKGQSALNGKPVYILVEPRDIDELPMRRIAADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	0	1
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	1.4	0.7991
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	6.5	0.6805
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	15.3	0.6364
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	15.4	0.6804
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	17.5	0.7475
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	28.3	0.7073
AT3G51710			D-mannose binding lectin prote...		Lus10025259 [exp]	33.3	0.6998
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	33.7	0.6534
AT1G02816			Protein of unknown function, D...		Lus10009855 [exp]	39.9	0.6341
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10038631 [exp]	41.7	0.5745

Compare expression of checked genes

Lus10002924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.