Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32160 650 / 0 Phox (PX) domain-containing protein (.1) AT2G25350 595 / 0 Phox (PX) domain-containing protein (.1) AT3G15920 434 / 3e-142 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001496 [exp] 663 / 0 AT4G32160 294 / 1e-92 Phox (PX) domain-containing protein (.1) Lus10001495 [exp] 398 / 8e-136 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1) Lus10023125 [exp] 205 / 8e-57 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026000 [exp] 818 / 0 AT4G32160 736 / 0.0 Phox (PX) domain-containing protein (.1) Potri.006G256000 [exp] 808 / 0 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1) Potri.001G201900 [exp] 531 / 4e-180 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [flax] [poplar] PX PX domain
Representative CDS sequence Show only first row Show all	>Lus10002925 pacid=23148600 polypeptide=Lus10002925 locus=Lus10002925.g ID=Lus10002925.BGIv1.0 annot-version=v1.0 ATGCAGGGACGGAGTCCGCCGAAGCACAGACACGATGGCACTTCGCCCTTGCCTTTGGGGATGGATTGGAGTCCTCCTCCTCGGAAATGGAACGGACGGG ACACAGTTTGGCCACATGATCATAGAACAGGGTGGAGTTACTGTGTCACTATTCCTTCCTGGGTTGTCCTTGCGAAGTCAAGAGATTCAGATCCTGTCGT GGGGCAGTTTTACAGGGTTCAGGTTGGTCTGCAATCACCTGAGGGGTTCACAACTACACGTGGAGTATTGAGAAGATTTAATGATTTTCTTAGGTTATTT GCAGATCTTAAGAAGGCATTTCCAAAAAAAAGTCTTCCACCAGCTCCACCTAAGGGACTATTGCGTATGAAAACAAGAGCATTGCTGGAAGAGAGGAGGT GTTCTTTGGAGGAGTGGTTGACGAAACTACTATCTGACATTGATATATCTAGAAGCATGGCTGTGGCATCGTTTCTTGAACTTGAAGTGGCTGCGAGATC ATCTTTCCAGGATGCAAGTCAGGAGTCTTCAGAATCGGCTTTAGTGGGTGATGCTACCACTCCTTCCTCTCAGATACCTCTAAATTCGAGCTCATCTGGT CTCACTGCTACTTCATCAGTTGCTTCCGATTATGGCAGTGATACTGCTTATGAAGCATCTGAGATTGGAACACCAAGGTTAGGCAAGGACGAAAGTTCCG AAATTGGAGTGGAGGATTTATCATTGGATGAAGATCTCACAAACCCAATAGAAAAGCTGGCTAAGTATGGTATCTCCAACATTGATGAAGGACTCTTTAT GGGGCAGACTATTATAGAGCAGCTTGAAGGCATTCCTAGGCATAAATCTCACACCAGACACGCGAACAGTATCACACGGAACTCCATGTACAATGGTAAT GCTTCTAAAGTTGTTTCTCTTTCTGGAAATGGAGTGGAATTGTTCTCTGAGCCTGAGCATTATGGTACGGCACTTGGTCATGCTCGGAAATTGTCTAGTG AGAGTGTTGGAAGTGATGGAAGTTCTTTGAGAGGCAGCGAAAATATCGGTGTATCAAATTCAATGGTTGATGCATCGCCTGACCGTCCAAGAGGTGCCGA GGTTTCCAGCTCTACACAGATAGTTCTTCCGTTGGATCAGCGTCACAAAATGACAAGAGTCCTCTCGACGATGCAAAGAAGACTAGTCACTGCAAAAACG GACATGGAGGACCTTATTTCTCGACTAAATCAAGAAAGAGCTACTAAAGATTATCTCACTAGGAAGGTAAAGGACCTGGAGGTGGAACTCGAAACCTCCA AACAGAAAAATAAGGAAAACCTGCAGCAAGCTATTTTGATTGAGAGAGAGAGGTTAACACAGATGCAATGGGATATGGAGGAACTCAGGCGGAAAGTACT TGAATCAGAGCTGAAACTAAAGTCTAAAGAGGATGAAAAGTCAAGCATCAATTCAGATGATGGACCTTCGAATCAGGAAATGCCTATGGCACAGCAAGAG CTAGACGTTACTAGAAAGAAGCTTGAGGACCTGACAAGAAAATATGAAGCATTGGAAGCAAAATCAAAGGCAGAGATAAAGTTTCTTGCAAAGGAGTTCA AAGCTTTACAAAGTTCCCAGACGGCACTGAAGGAGCAGCACGAGCGAACCATGAAGGAGAAATCTGAAATCGAGAAACATCTTGAACAGGAGATAACGAT TAGGGAACACCTTCAATATCAGCAGAAACTACTCGTACACGATTGCAGGACCCTGTGGAGCCAACTTCAGGAATGCAACCTTAGTCTATCCAAGGAAGAC GACGAAGACGATTTCGTTCTGAACTCCTCGTTGGAAGATGCTCTCGATTTGTTGGAAACGTTTGATGACCGGATTAGCCTTATTCTTGCAGAGGCGCAGT TGTTAGCTGCAGAGGACGAGAAGTCATCGAATTGTGAAGAATTGGGAATGTTGTTGGCAGATATAGTAGCGGATAATGCTAAGCTGAGGAAACAAGTGAA TGCTGCTACCCGTCGAGTTCTCCGGAAAGGCACGATAACACGGGACAATCGCGAGTCCTCATTAAATTAA
AA sequence Show only first row Show all	>Lus10002925 pacid=23148600 polypeptide=Lus10002925 locus=Lus10002925.g ID=Lus10002925.BGIv1.0 annot-version=v1.0 MQGRSPPKHRHDGTSPLPLGMDWSPPPRKWNGRDTVWPHDHRTGWSYCVTIPSWVVLAKSRDSDPVVGQFYRVQVGLQSPEGFTTTRGVLRRFNDFLRLF ADLKKAFPKKSLPPAPPKGLLRMKTRALLEERRCSLEEWLTKLLSDIDISRSMAVASFLELEVAARSSFQDASQESSESALVGDATTPSSQIPLNSSSSG LTATSSVASDYGSDTAYEASEIGTPRLGKDESSEIGVEDLSLDEDLTNPIEKLAKYGISNIDEGLFMGQTIIEQLEGIPRHKSHTRHANSITRNSMYNGN ASKVVSLSGNGVELFSEPEHYGTALGHARKLSSESVGSDGSSLRGSENIGVSNSMVDASPDRPRGAEVSSSTQIVLPLDQRHKMTRVLSTMQRRLVTAKT DMEDLISRLNQERATKDYLTRKVKDLEVELETSKQKNKENLQQAILIERERLTQMQWDMEELRRKVLESELKLKSKEDEKSSINSDDGPSNQEMPMAQQE LDVTRKKLEDLTRKYEALEAKSKAEIKFLAKEFKALQSSQTALKEQHERTMKEKSEIEKHLEQEITIREHLQYQQKLLVHDCRTLWSQLQECNLSLSKED DEDDFVLNSSLEDALDLLETFDDRISLILAEAQLLAAEDEKSSNCEELGMLLADIVADNAKLRKQVNAATRRVLRKGTITRDNRESSLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	0	1
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	1.4	0.9250
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	1.4	0.9350
AT3G51130			unknown protein		Lus10014270 [exp]	3.5	0.9002
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	4.0	0.9067
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	4.2	0.9144
AT3G14910			unknown protein		Lus10043078 [exp]	4.5	0.9238
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	4.9	0.9244
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	5.0	0.9218
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	5.2	0.9053
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	5.5	0.9034

Compare expression of checked genes

Lus10002925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.