Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71360 404 / 1e-131 Galactose-binding protein (.1) AT1G22882 405 / 2e-131 Galactose-binding protein (.1) AT4G23950 275 / 6e-83 Galactose-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003532 [exp] 929 / 0 AT1G71360 432 / 3e-146 Galactose-binding protein (.1) Lus10032405 [exp] 317 / 7e-98 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2) Lus10023065 [exp] 309 / 8e-95 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068900 [exp] 623 / 0 AT1G71360 484 / 3e-165 Galactose-binding protein (.1) Potri.003G141500 [exp] 344 / 1e-108 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2) Potri.001G089700 [exp] 324 / 8e-101 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10002929 pacid=23164969 polypeptide=Lus10002929 locus=Lus10002929.g ID=Lus10002929.BGIv1.0 annot-version=v1.0 ATGCAGAGATCACAAAGGGCTTTTCTGCAAAGAAGAGCTTTCGAGAAGGATATCAGTGGAGTAAGGAACCGGTTATACAAGATTTCCTTGTCTCTGGTTC TTCTTTTGTGGGGGTTTCTTTTTCTATCCAGTTTGTGGATCAGCCAGGGTGATGGCTATAGAGATGGACTTGCAGTAAATTCACATGATGTGGGCGTGTC TACTTGGACAGCAGAGAAGCTGGAAAATGGGGAAAACTCAGATTCAGTACATAAAAGACGTGTTGAAGAGTTTGGTAGCCATTCCGATGAGACTTTGTGT GTAGATGTACCTATAAAGAAAGGTCCAAATGAGGATTTCTTTGTTGACGAGGGGAAAAACAACGATGGATTCAGTCTGCAGCATCTGGAGGCAACCATTG GAGGGAGATCTGAAGATACTAGTCCAAAGAATGATCGACTGTCTCGTGTTGTACCCCTTGGCCTTGATGAATTCAAAAGCAGAGCATTCAGCTCTAAAAC TAAGAATCACGTTTTCCCGTTGATTCTTTCCTGTTCAAGTGAACGATCGGAAGACTTATCTTGGATTGATGTAGCAATGCAGAGATCACAAAGGGCTTTT CTGCAAAGAAGAGCTTCCGAGAAGGATATCAGTGGAATAAGGAACCGGTTATACAAGATTTCCTTGTCTCTGGTTCTTCTTTTGTGGGGGTTTCTTTTTC TATCCAGTTTGTGGATCAGCCAGGGTGATGGCTATAGAGATGGACTTGCAGTAAATTCACATGATGTGGGCGTGTCTACTTGGACAGCAGAGAAGCTGGA AAATGGGGAAAACTCAGATTCAGTACATAAAAGACGTGTTGAAGAGTTTGGTAGCCATTCCGATGAGACTTTGTGTGTAGATGTACCTATAAAGAAAGGT CCAAATGAGGATTCCTTTGTTGATGAGGGGAACAACAACGATGGATTCAGTCTGCAGCATCTGGAGGCAACCATTGGAGGGAGATCTGAAGATACTAGTC CAAAGAATGATCGACTGTCTCGTGTTGTACCCCTTGGCCTTGATGAATTCAAAAGCAGAGCATTCAGCTCTAAAACTAAGAGTGGAACTGGTCCAGCAGG AAGTGTAGTACACAGAATGGAGCCTGGTGGGAAAGAGTACAACTATGCTTCATCTTCAAAGGGCTCAAAAGTCTTGGCCTTTAACAAGGAGGCAAAAGGA GCATGTAATATCTTAATAAGAGATAAGGACAAGTACCTCCGTAATCCATGTTCCGCAGAAGAGAAGTACGTTATAATTGAACTTTCAGAAGAGACGTTGG TAGATACTATAGAAATCGCAAATTTTGAGCACTACTCATCTAATGTAAAGGATTTTGAGCTGCTGGGTAGCTTGGTTTATCCAACTGCACAATGGGTGAA ACTGGGGAATTTTACAACGGCGAATGTGAAGCAGGTTCGGAGGTTTGTGCTTTCAGAACCAAAATGGGTAAGATATATGAGGTTGAATCTGCTAAGTCAT TATGGGTCCGAGTTCTATTGCACGCTAAGCCTTTTTGAGGTCTACGGAGTTGATGCTGTTGAGAAAATGCTGGAAGATCTGGTATCTGTTCAAGAAAAAG TTTTTGTGCCAGAGGAGGAGCAGAAACCGTTTGCGTCCCAGTTGGGACAGTCGGAGGGGGATGGTGATCAGCTGGACTCGTTCAAAGAAATTGAATCTGA GCTGTCAGTTGAAAATCCTAATTTGAAAAGTGAGGTCTGGCGAAATGAAATGGCTGGACCTGTTGAAGAAATTCCTTATCATCACAGCGGGAGGTCTAGT GGTGACAGCGCTCTAAAAGTGTTGATGCAGAAAGCCCGTTCACTTGACCTAAGTCTTTCCCTTTTAGAACGGTATGTAGAGGAAGTTAATTCCAGACATG GGAATATTTTAAAAGACTTGGACAAGGATATAGCAGATAATACTTTGCTTTTAGAAAAGATCAGATTGGACATGAAGAACTTCCATGCCAGCCAGAAACT TATCGCAGAAGAACTCAATGATCTTATTTCTTGGAGGTCCCTTGTTTCGAGAAAAATGGATGATATCCTCAGGGACAACCTCGATCTCAGATCAAAGGTT GGAAAAGTAGAGGAAAATCAGGTATCGATGGAGAAGAAGGGCATAGTGTTATTCTCGGTATGCTTGATTTTCGGGTTTGTAGCTTTGTTGAGGGTAGTAG TAGATATAGTACAGCTGGTCTGCATGGTATTTAGCGAGAAATCCAGGAAATTTTGTTGTGTAAGCTCTTCCTGGTTGGTTTTGCTCCTCAGTTATACCAT TGTAATTTTGATACTTTCATTATGA
AA sequence Show only first row Show all	>Lus10002929 pacid=23164969 polypeptide=Lus10002929 locus=Lus10002929.g ID=Lus10002929.BGIv1.0 annot-version=v1.0 MQRSQRAFLQRRAFEKDISGVRNRLYKISLSLVLLLWGFLFLSSLWISQGDGYRDGLAVNSHDVGVSTWTAEKLENGENSDSVHKRRVEEFGSHSDETLC VDVPIKKGPNEDFFVDEGKNNDGFSLQHLEATIGGRSEDTSPKNDRLSRVVPLGLDEFKSRAFSSKTKNHVFPLILSCSSERSEDLSWIDVAMQRSQRAF LQRRASEKDISGIRNRLYKISLSLVLLLWGFLFLSSLWISQGDGYRDGLAVNSHDVGVSTWTAEKLENGENSDSVHKRRVEEFGSHSDETLCVDVPIKKG PNEDSFVDEGNNNDGFSLQHLEATIGGRSEDTSPKNDRLSRVVPLGLDEFKSRAFSSKTKSGTGPAGSVVHRMEPGGKEYNYASSSKGSKVLAFNKEAKG ACNILIRDKDKYLRNPCSAEEKYVIIELSEETLVDTIEIANFEHYSSNVKDFELLGSLVYPTAQWVKLGNFTTANVKQVRRFVLSEPKWVRYMRLNLLSH YGSEFYCTLSLFEVYGVDAVEKMLEDLVSVQEKVFVPEEEQKPFASQLGQSEGDGDQLDSFKEIESELSVENPNLKSEVWRNEMAGPVEEIPYHHSGRSS GDSALKVLMQKARSLDLSLSLLERYVEEVNSRHGNILKDLDKDIADNTLLLEKIRLDMKNFHASQKLIAEELNDLISWRSLVSRKMDDILRDNLDLRSKV GKVEENQVSMEKKGIVLFSVCLIFGFVALLRVVVDIVQLVCMVFSEKSRKFCCVSSSWLVLLLSYTIVILILSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	0	1
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	1.0	0.8765
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Lus10001753 [exp]	2.0	0.8566
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10024285 [exp]	3.9	0.8525
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	4.0	0.8511
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	5.9	0.8450
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	6.3	0.8197
AT4G28600		NPGR2	no pollen germination related ...		Lus10023748 [exp]	8.5	0.8287
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10013641 [exp]	8.7	0.7791
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	12.5	0.7951
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10042850 [exp]	15.0	0.8222

Compare expression of checked genes

Lus10002929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.