Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71380 702 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 678 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G02290 528 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 513 / 8e-180 ATCEL2 cellulase 2 (.1) AT1G70710 493 / 5e-172 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 481 / 3e-167 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G39010 465 / 7e-161 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G23560 424 / 4e-145 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT4G39000 422 / 5e-144 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT2G44570 412 / 3e-140 ATGH9B12 glycosyl hydrolase 9B12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038223 [exp] 533 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10008208 [exp] 526 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001666 [exp] 493 / 1e-171 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10029071 [exp] 482 / 2e-167 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10025880 [exp] 480 / 2e-167 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10018077 [exp] 479 / 5e-166 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 471 / 4e-163 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10027205 [exp] 463 / 3e-160 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027201 [exp] 449 / 3e-154 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069300 [exp] 760 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.002G202400 [exp] 525 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 521 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 511 / 3e-179 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.010G109200 [exp] 476 / 5e-165 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G127900 [exp] 475 / 1e-164 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.004G162200 [exp] 474 / 1e-164 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.008G132700 [exp] 474 / 2e-164 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 465 / 6e-161 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G128000 [exp] 441 / 2e-151 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10002930 pacid=23164958 polypeptide=Lus10002930 locus=Lus10002930.g ID=Lus10002930.BGIv1.0 annot-version=v1.0 ATGGGAAAATACAGTAAGAATACGATGGTGGGTTTTAAGACCTTAATAATTAGGGTCTTGTTTTGCTCCATTGCCGTTTTATTCTCAGGGTATGGCGCCC AAGCAGCTGTCGTGAATCCAAACTATAGAGAAGCGCTAGCAAAATCATTATTGTTCTTTCAAGGACAGAGGTCAGGAGCTCTTCCTCGTACCCAGCAGAT CACTTGGAGGTCCGATTCTGCTCTTAATGATGGCCACCTTGCTAACGTGGATTTGACCGGCGGGTATTACGACGCAGGGGACAACGTGAAGTTCAACTTC CCAATGGCCTTCACCACAACGATGCTGTCATGGAGCACACTTGAATATGGGAAGCGAATGGGCCCCCAATTGCCGGCTTCTCGGGCCGCCATCCGTTGGG CCACAGACTACTTGCTCAAATGCGCAACCGCAACTCCCGGCAGACTCTACGTCGGCGTCGGCGACCCCAATGTTGATCACCGCTGCTGGGAGCGGCCGGA GGACATGGACCCCGCCCGCTCGGTGTACTACGTCTCTCCCTCTAACCCTGGTTCGGATGTTGCGGGAGAGACGGCGGCAGCATTGGCCTCTGCTTCGATG GTTTTCAGGAGCACCGATAGCAAGTACGCAGCTCTCTTGCTGAGCACAGCTAAAAAGGTGTTGCAATTTGGGTTGCAGTTCCGTGGTGCTTATAGTGATA AACTGGGGGGTTACGTCTGCCCTTTCTATTGCTCATATTCCGGCTACAAGGATGAGTTACTCTGGGGAGCAGCTTGGCTGTTTAGAGCAACAAATAAGTT TGAGTACTACAATATTATACAGTCACTCGGGGCTAATGACGAACCAGACCTCTTTAGCTGGGATAACAAATATTCTGGTGCTCATGTTCTGTTATCCAGA CTAGCATTAGTGAACAATGACAGGAACTTCCAGCAATACAAACAGCAAGCTGAGAATTTCATCTGCAAAATTTTGCCAAACTCTCCTTACAAAACCACTC AGTACACACAAGGAGGATTGATGTACAAACTACCTCAAAACAATCTCCAATACGTGACATCCATAACATCCCTGCTCACTACTTATGCCAAATACATGAA GGCGTCTAAAACCAAGTACACATTCAACTGTGGGAATCAAGTCGTCGATTACATTCTAGGAGTGAATCCAAAAAGAATGTCCTACATGGTAGGTTATGGA CCTAACTTCCCAAAGAGGATTCACCACAGAGGCTCCTCCCTGCCTTCAAAGACAAGCCACCCACAATCCATGGGCTGCAGTGGAGGGTTCCAACCTTTCT ACTACTCACCAAACCCTAATCCCAACATTTTAACCGGAGCCATTGTCGGCGGCCCAGACCAGAATGACGGCTATCCAGATGATCGTTCTGATTATAGCCA CGCAGAGCCTGCTACATATGTCAATGCTGCTATTGTTGGTCCTCTGGCATATTTTGCAGGGGCCTTTCCACACTAA
AA sequence Show only first row Show all	>Lus10002930 pacid=23164958 polypeptide=Lus10002930 locus=Lus10002930.g ID=Lus10002930.BGIv1.0 annot-version=v1.0 MGKYSKNTMVGFKTLIIRVLFCSIAVLFSGYGAQAAVVNPNYREALAKSLLFFQGQRSGALPRTQQITWRSDSALNDGHLANVDLTGGYYDAGDNVKFNF PMAFTTTMLSWSTLEYGKRMGPQLPASRAAIRWATDYLLKCATATPGRLYVGVGDPNVDHRCWERPEDMDPARSVYYVSPSNPGSDVAGETAAALASASM VFRSTDSKYAALLLSTAKKVLQFGLQFRGAYSDKLGGYVCPFYCSYSGYKDELLWGAAWLFRATNKFEYYNIIQSLGANDEPDLFSWDNKYSGAHVLLSR LALVNNDRNFQQYKQQAENFICKILPNSPYKTTQYTQGGLMYKLPQNNLQYVTSITSLLTTYAKYMKASKTKYTFNCGNQVVDYILGVNPKRMSYMVGYG PNFPKRIHHRGSSLPSKTSHPQSMGCSGGFQPFYYSPNPNPNILTGAIVGGPDQNDGYPDDRSDYSHAEPATYVNAAIVGPLAYFAGAFPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	0	1
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10012526 [exp]	4.9	0.8225
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Lus10026200 [exp]	11.0	0.8526
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	12.8	0.8589
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	13.2	0.8482
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	16.2	0.8383
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	20.6	0.8426
					Lus10002087 [exp]	27.6	0.8443
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	30.0	0.8236
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	35.0	0.8431
AT2G36380		ABCG34, PDR6, A...	ATP-binding cassette G34, plei...		Lus10023879 [exp]	35.7	0.8232

Compare expression of checked genes

Lus10002930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.