Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 212 / 7e-65 Pectin lyase-like superfamily protein (.1) AT3G07830 207 / 3e-63 Pectin lyase-like superfamily protein (.1) AT3G07840 203 / 3e-61 Pectin lyase-like superfamily protein (.1) AT5G48140 199 / 1e-59 Pectin lyase-like superfamily protein (.1) AT3G14040 194 / 3e-57 Pectin lyase-like superfamily protein (.1) AT2G15450 192 / 3e-57 Pectin lyase-like superfamily protein (.1) AT2G15460 191 / 9e-57 Pectin lyase-like superfamily protein (.1) AT3G07850 188 / 4e-55 Pectin lyase-like superfamily protein (.1) AT1G80170 188 / 4e-55 Pectin lyase-like superfamily protein (.1) AT1G43080 187 / 4e-55 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003531 [exp] 454 / 3e-157 AT4G13530 186 / 7e-55 unknown protein Lus10039154 [exp] 241 / 5e-76 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 239 / 1e-75 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 238 / 9e-75 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 238 / 9e-75 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 234 / 2e-73 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 229 / 5e-71 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 229 / 6e-71 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 223 / 7e-66 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 251 / 8e-80 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 251 / 8e-80 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 251 / 8e-80 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 248 / 7e-79 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 248 / 7e-79 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 248 / 7e-79 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 248 / 1e-78 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 226 / 4e-70 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 217 / 3e-66 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 206 / 1e-62 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10002931 pacid=23164973 polypeptide=Lus10002931 locus=Lus10002931.g ID=Lus10002931.BGIv1.0 annot-version=v1.0 ATGAACAGTAGTATTGTTGTATCCCTATCTCTATGGATTAGTTTCTTTACGATCTGTACGCATGGTCGTGATCCAAAAATACTCGACGTGACCCGATTTG GAGCCAAACCAGATGATAAAACTGACATCACTCAGGGTTTGATGAAAGCATGGATTAAAGCATGTAAATCAGAGAGGGAAAGCAGAATAGTGATTCCAGA AGGGAATTACGTAATGGGAATGGTGGGTCTGGAAGGGCCATGCAAAAGTGATGAGATTCATGTCCAAATCGATGGCTACATAAAAACACCACCCACTGGT TTAAGAGGCCTCAGCTGGATTACCTTTTCAAGCCTTCGAAATCTACAACTATATGGGAATGGCACTCTCGACGGCCAAGGACCTCTCGCTTCTAAAGCAT CCAATAATCGCAAGAACATGCCCCACCTCCCACTCGCCACCAATCTCAGATTTGAGTCCATCACCAACGCTATCATACAAGGCCTTACTTCTAAAGACAG CCGTAATTTCCACATCGACGTTTCCCGTTCCAAGAACGTCACCTTGAGAAGCCTTACCATCACCGCACCCCTCGACAGTAACACAACCGTGGGGATATTC CTCCGCCGATCCCACCAAGTCACCATCTCCGATGCCACCATCCAAACTGGCCACTACTGCATCCACCTCTCTGATGGGTCCCAGGAGGTCAATATTCACA ACATGAAATGTGGGCCCGGCGGAGGAGGCGGCGTCCTCTTAGGAACCCTGGGAAGGTCTCCCGACGAGGAAAAGGTGTTTGACGTGGCAGTCGTCAACAG TAGCTTCATCTCCACGGCTAACGGCCTCAGGATTGAAGCTGTGCCTGGAACCATTAACATGGCCTCCAATATTAGCTTTGATGATATAACTATGGATAAC GTCATCAATCCTATTACGATTGATCAGCATTTTTGTCAAGACAAATCTTGTGACAAGATGGAGGGGAAAGTGAAAATTAAGGATGTGAGCTTCAAGAACA TAAAGGGGAGTTGTGCATCACCATTGGCAATTAACATCTCTTGTTACAATCCTTCTTTTTGTAAAAATGTGCAGTTTACTGATATCGAGTTTAAACCAAG TAGTAAAAATTTAGAACCCTTAAAATTTCAATGCACCAATGTTAAAATCATTAAAAAAGGATTGGTTAGTCCGCCCAACGAATGTCAATGA
AA sequence Show only first row Show all	>Lus10002931 pacid=23164973 polypeptide=Lus10002931 locus=Lus10002931.g ID=Lus10002931.BGIv1.0 annot-version=v1.0 MNSSIVVSLSLWISFFTICTHGRDPKILDVTRFGAKPDDKTDITQGLMKAWIKACKSERESRIVIPEGNYVMGMVGLEGPCKSDEIHVQIDGYIKTPPTG LRGLSWITFSSLRNLQLYGNGTLDGQGPLASKASNNRKNMPHLPLATNLRFESITNAIIQGLTSKDSRNFHIDVSRSKNVTLRSLTITAPLDSNTTVGIF LRRSHQVTISDATIQTGHYCIHLSDGSQEVNIHNMKCGPGGGGGVLLGTLGRSPDEEKVFDVAVVNSSFISTANGLRIEAVPGTINMASNISFDDITMDN VINPITIDQHFCQDKSCDKMEGKVKIKDVSFKNIKGSCASPLAINISCYNPSFCKNVQFTDIEFKPSSKNLEPLKFQCTNVKIIKKGLVSPPNECQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07820			Pectin lyase-like superfamily ...		Lus10002931 [exp]	0	1
AT1G64030		ATSRP3	serpin 3 (.1)		Lus10019736 [exp]	5.7	0.6816
					Lus10011438 [exp]	6.7	0.6683
					Lus10031019 [exp]	9.1	0.6954
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	15.5	0.6169
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	16.7	0.6169
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	17.9	0.6169
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	18.2	0.6625
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	21.2	0.6082
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	21.4	0.5913
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	23.5	0.5628

Compare expression of checked genes

Lus10002931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.