Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13530 160 / 1e-47 unknown protein AT4G10080 125 / 6e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003531 [exp] 462 / 4e-162 AT4G13530 186 / 7e-55 unknown protein Lus10030342 [exp] 248 / 3e-81 AT4G13530 176 / 1e-53 unknown protein Lus10041074 [exp] 225 / 4e-72 AT4G13530 170 / 2e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071300 [exp] 160 / 1e-46 AT4G10080 125 / 3e-33 unknown protein Potri.013G099200 [exp] 159 / 5e-46 AT4G13530 116 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002932 pacid=23164962 polypeptide=Lus10002932 locus=Lus10002932.g ID=Lus10002932.BGIv1.0 annot-version=v1.0 ATGGATTCACTGGAGTTTCAAGACTGGGAGGTGCTGACTCATCCCGACTTGGATGCTGTTAGCTCCCCTGTCTTGACGGACAATCCGAGGCATTTGGAGG AAATCGAGGCTGATTCCGGTGGGATGATCAGGTTAGATTACTTCTCTCTCGCAAATGATAGCATGTCTGGTAAGGCGGCTGTTATTGCTACTAGTGATGT AGAAAGTTCTGTTGGTTCTAATAATCCCAGCTGGATTGATCCATATACTGATGTTCGGTATGAGAGTAAGAATCCTTGTGGATTCTGGTCTGATTCAGGC AGTGATCGCTCCGATGGACGTAAAGTTAGTGACTTGGGTCTGAGAAGTGATCAATTTACGGGATCTGAGGAAACTGAAGCCAAAGACGTTGCCTTTGATT GCGTGAAGGATGAGTTTTCCAGTTGCCATAGGAAAACTGAGGTGGGGGGTTTCCAAGAGAATAAGACCAACTACTGCTCTGATGAGGTTGTAAGTGGAAA TGATTCGGTAGAGGATAACCCTAGTGTCGTTGAGGCTGCTGTGGAGGAGGTGAAGAAGCAAGTTGTGTGGTGGAAAGTGCCTCGTGAATTGTTGAAATTT TCTGTCTTCAGAGTTAATCCTGTGTGGACTTTCTCAATGGCTGCAGCTGTGATGGGATTTGTTGTCTTGGGTCGGAGGTTATATAACATGAAGCGCAAGG CAAAGACCCTGCAGCTTAAAGTTACCGTCGATTATAAGAAGGTTTCCCAGTTCACGAGCCGTGCTGCACGGCTGAATGAAGCGTTTTCGTTTTCGGTGGG GAGACGGGTTCCTATAGTGCGGCCTATGCTACCAGCTGCTGGAGTTAACCCATGGCCTGTGATGAACATGAGATGA
AA sequence Show only first row Show all	>Lus10002932 pacid=23164962 polypeptide=Lus10002932 locus=Lus10002932.g ID=Lus10002932.BGIv1.0 annot-version=v1.0 MDSLEFQDWEVLTHPDLDAVSSPVLTDNPRHLEEIEADSGGMIRLDYFSLANDSMSGKAAVIATSDVESSVGSNNPSWIDPYTDVRYESKNPCGFWSDSG SDRSDGRKVSDLGLRSDQFTGSEETEAKDVAFDCVKDEFSSCHRKTEVGGFQENKTNYCSDEVVSGNDSVEDNPSVVEAAVEEVKKQVVWWKVPRELLKF SVFRVNPVWTFSMAAAVMGFVVLGRRLYNMKRKAKTLQLKVTVDYKKVSQFTSRAARLNEAFSFSVGRRVPIVRPMLPAAGVNPWPVMNMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13530			unknown protein		Lus10002932 [exp]	0	1
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10036560 [exp]	7.1	0.9021
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	8.1	0.8694
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	8.5	0.9049
AT4G27130			Translation initiation factor ...		Lus10015124 [exp]	12.2	0.9032
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10018843 [exp]	14.7	0.9036
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	15.5	0.8785
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	17.3	0.9010
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	18.8	0.8931
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10018988 [exp]	19.7	0.8415
AT4G17790			SNARE associated Golgi protein...		Lus10000905 [exp]	19.8	0.8715

Compare expression of checked genes

Lus10002932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.