Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 97 / 1e-22 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 64 / 7e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 61 / 1e-10 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G01580 57 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 57 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003527 [exp] 170 / 9e-51 AT5G08780 54 / 3e-08 winged-helix DNA-binding transcription factor family protein (.1) Lus10039303 [exp] 118 / 7e-29 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10016777 [exp] 112 / 7e-28 AT3G18990 115 / 3e-29 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 109 / 6e-27 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 107 / 5e-26 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027543 [exp] 98 / 5e-22 AT3G18990 63 / 2e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 94 / 5e-21 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015266 [exp] 94 / 2e-20 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10017970 [exp] 85 / 1e-18 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 144 / 3e-38 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 98 / 2e-22 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 84 / 1e-18 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 79 / 4e-16 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 71 / 1e-13 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 69 / 2e-13 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 69 / 8e-13 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 66 / 9e-12 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 66 / 1e-11 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.014G036800 [exp] 53 / 2e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10002934 pacid=23164970 polypeptide=Lus10002934 locus=Lus10002934.g ID=Lus10002934.BGIv1.0 annot-version=v1.0 ATGGCGATTTCCACTACTAAGAACAGCCGCACAGGAGGAGGAGGGTCAGGACCTCACTTCTTCAAGATCATACTTGATGAAGCTCTTCGCGATGGAAAAC TTGCAAGTCTTTTACTCTTTCTCCTCATCCCATTCATTCCAACAAAGTTCCTCAGGAAGTACGGCAACAATCTTCAGAACAGGATAATCCTGAAGGATCC AACAGGGACTGAATGGCCGGTGGAACTCACAAACTCCGAGGGCGAAATTTGGTTGGATAAAGGTTTCCCGGAATTCGCCAAGTTCTACTCTTTATCCTAT GGCTATCTCGTAGTTTTCCAGCTCCAGTTCAAGGCTGATGATGATGATGATTGTTTCAAGATCGTGGTGTTTGACCCGACTGCAACTGAGATCAACTACC CTCCGATACAGCAACAGCTCCAGACCAACCCTACTAGCGTTGAGGAAGAAGATTCAACAAGTGTGTTTAAATCAGATGACGATTCGACAAGTGATTCTGA ATCAGATGGTGAGGTCCGAATCCTTTCAAGGCAGAGCTCTGAACTAGATCCTCCAAGTCCCAAGATTAGGAGAACCATCAGTAGTTCAGATGTTGGGAGA TGTAAGAGTAAGAGTTCTTACTCAGAGTTGGGTGCATCAGCTCCAGCAAAAGTACTGGACAAGGCTACAGGAGAGAATCGGAGAGGAAGTTTGAGCAAAG AAGAAAAGAGGGAAGCAATAGATAGAGCAAGAAGTGCTTTCACCTCCAAAAATCCCTCCTTCGTGTTGGCTGTACAACCTTCCTACCTTAGTCCTCTTCC CAACGTGGCTATACCATTGAGCTTTGCCAAGGAGCACTTGAAGGATGGGAATGGAAAAGCAATCCTTGTGAGGGTTAGTGATGGGAGAAAGTGGAAGGTG AATTGCACTGTTTCTTGTGATCCTGCAGGTCCGGCTAAGAGGATGAAAGCATGGTTTGGTGGCTCAGGCTGGAAAGACTTTGCGCTAGGAAATCAGCTAT CAGTTGGTGATGTTTGTGCTTTTGAACTCACCACCACCACCACAAGTGTCAGTTTTGGAGTCACCATTTTCAGAAATTATAAGCAGCCATGGACCTGGAT GTCAACTTAA
AA sequence Show only first row Show all	>Lus10002934 pacid=23164970 polypeptide=Lus10002934 locus=Lus10002934.g ID=Lus10002934.BGIv1.0 annot-version=v1.0 MAISTTKNSRTGGGGSGPHFFKIILDEALRDGKLASLLLFLLIPFIPTKFLRKYGNNLQNRIILKDPTGTEWPVELTNSEGEIWLDKGFPEFAKFYSLSY GYLVVFQLQFKADDDDDCFKIVVFDPTATEINYPPIQQQLQTNPTSVEEEDSTSVFKSDDDSTSDSESDGEVRILSRQSSELDPPSPKIRRTISSSDVGR CKSKSSYSELGASAPAKVLDKATGENRRGSLSKEEKREAIDRARSAFTSKNPSFVLAVQPSYLSPLPNVAIPLSFAKEHLKDGNGKAILVRVSDGRKWKV NCTVSCDPAGPAKRMKAWFGGSGWKDFALGNQLSVGDVCAFELTTTTTSVSFGVTIFRNYKQPWTWMST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	0	1
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	4.9	0.7735
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	9.7	0.7601
AT3G06240			F-box family protein (.1)		Lus10018106 [exp]	13.9	0.8212
AT1G30190			unknown protein		Lus10023301 [exp]	15.4	0.8640
					Lus10039453 [exp]	15.7	0.8049
					Lus10039764 [exp]	15.8	0.7801
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	18.5	0.8198
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	18.7	0.8225
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010701 [exp]	25.1	0.7813
					Lus10010246 [exp]	29.1	0.7670

Compare expression of checked genes

Lus10002934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.