Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22730 315 / 3e-102 Major facilitator superfamily protein (.1) AT5G65687 255 / 2e-79 Major facilitator superfamily protein (.1) AT5G64500 212 / 8e-63 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003528 [exp] 385 / 9e-130 AT2G22730 495 / 8e-173 Major facilitator superfamily protein (.1) Lus10019244 [exp] 299 / 8e-96 AT2G22730 638 / 0.0 Major facilitator superfamily protein (.1) Lus10011580 [exp] 298 / 9e-91 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081100 [exp] 350 / 1e-115 AT5G64500 617 / 0.0 Major facilitator superfamily protein (.1) Potri.001G286600 [exp] 333 / 3e-109 AT5G64500 548 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10002935 pacid=23164968 polypeptide=Lus10002935 locus=Lus10002935.g ID=Lus10002935.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAAAGGCAGAGGAAGTGAAGACGGAGAACCGGGAAACAAACCCGTCTGAGAATATGGCGGAAAATTCAGCTTCGTCTCTGTTGGAACAAT CAGCAACAGTTTCTCAGCCATCGTGGTTCACTCCCAAAAGGGTAGTGGGAATTGGTGAAGCTTCTTTTGTAAGCCTCGCTGCTCCTTTCATTGATGATAA TGCCCCTGCCAAACAGCGAACTGCATGGCTGGGAATATTCTTTATGTGTATATCAACTGGATATGCTGTTGGGTATGTATATGGTGGACAGGTTGGTGAT CACCTAAAGTGGCGCTATGCATTCTGGGGAGTGGCGATTTTGATGTTTCCATTTGTAGTATTGGGTTGGATTATGAAGCCTTTGCAATTGAAAGGTGTGA CCTTGTTGCATGGATCCTGTTGTTTTACACGCTCTGAGCCGATCAAAGCGGTCACTTCAGTAACAACTGGATCAGAAGTGCAAGGTGCCGATGATATGAA AATTATTAGTACAATAGTTAAGATTAAAGGTTTGAGTGCACGATTTCATCTGAGGCCGATTATTTTAGGTTTGGAAGTTTCAACTGGTAAAGTAGGCACG TTGGCTGCAGAACAGCTTGATCTGAAAATCCCTAAGATTTCTTCCAAGTCAGGATCAGAGTCGCCTAAGATAAATCAGTTTTCAAGATTCCTAAAAGATA TGAAAGAGCTTTTGAAGTCAAAGACATTCATCGTCAGTGTTCTAGGGTACACTGCTTACAATTTCGTCATTGGTGCATACGCTTACTGGGGTCCTAACGC TGGCACTCTTGCTGGTGGCTTTCTTCTAGATTATCTGACCAACACTATCCGCAATGCCTTTAAGAAAGTCTGGCTTTTTGGCCAGCTTCTTACTGGTGCT GTGTTAGCCGGGGCCATCTTTTGCTTCAGTGCTTTCTGCTTTAAGAACATGTATGGTTTCCTTGCCTTCTTCGCAATCGGTGAAGTGCTTGTATTTGCCA CTCAGTTTATGGATGTCAACCAAGGCAAGAATGTGACTTTTCTCTGCTCCATCAATTTGAAGGCTCCGGTGAACTATGTCTGTCGTCACTGTGTAAAACC AAGTTTAAGACCATTGTCGATGGCTATGTCAACAGTCGCGATTCACCTTTTTGGAGACGTGCCTTCCTCTCCACTCGTTGGCCTCCTCCAGGTTTCTGCT AGACCTGAAACTTCTCCTTTTTTGTTTAGGAATCATTGTGCTGATGGACAAAAATCCTTATCAGGACCGGATACACAATTGGAGGAAACTACTTTGATTT TGACATCCTTTCTGTTCCTGGCAGCTGCATTTTGGTTTATAGGAGTTTTCATGAAAAGTGTTGATAGATTCGATGAAGAAGAACCACCACAGAAATCAGC TGCCTCAGATACAACAGATGGAGCTGTGCCTCGGGAGAAGACAGACCCTTGA
AA sequence Show only first row Show all	>Lus10002935 pacid=23164968 polypeptide=Lus10002935 locus=Lus10002935.g ID=Lus10002935.BGIv1.0 annot-version=v1.0 MAEEKAEEVKTENRETNPSENMAENSASSLLEQSATVSQPSWFTPKRVVGIGEASFVSLAAPFIDDNAPAKQRTAWLGIFFMCISTGYAVGYVYGGQVGD HLKWRYAFWGVAILMFPFVVLGWIMKPLQLKGVTLLHGSCCFTRSEPIKAVTSVTTGSEVQGADDMKIISTIVKIKGLSARFHLRPIILGLEVSTGKVGT LAAEQLDLKIPKISSKSGSESPKINQFSRFLKDMKELLKSKTFIVSVLGYTAYNFVIGAYAYWGPNAGTLAGGFLLDYLTNTIRNAFKKVWLFGQLLTGA VLAGAIFCFSAFCFKNMYGFLAFFAIGEVLVFATQFMDVNQGKNVTFLCSINLKAPVNYVCRHCVKPSLRPLSMAMSTVAIHLFGDVPSSPLVGLLQVSA RPETSPFLFRNHCADGQKSLSGPDTQLEETTLILTSFLFLAAAFWFIGVFMKSVDRFDEEEPPQKSAASDTTDGAVPREKTDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	1.4	0.9258
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	2.8	0.9211
AT2G32415			Polynucleotidyl transferase, r...		Lus10031563 [exp]	3.5	0.8844
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10027228 [exp]	4.1	0.8411
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	5.3	0.8637
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	7.2	0.8514
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10030610 [exp]	10.4	0.8279
AT5G66780			unknown protein		Lus10026022 [exp]	10.8	0.8259
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	11.0	0.8548
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	11.2	0.8642

Compare expression of checked genes

Lus10002935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.