Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 582 / 0 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 500 / 4e-175 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 491 / 2e-171 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 482 / 4e-168 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 458 / 6e-159 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 441 / 2e-152 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 246 / 5e-75 Leucine-rich repeat (LRR) family protein (.1) AT3G56370 172 / 4e-46 Leucine-rich repeat protein kinase family protein (.1) AT3G20820 164 / 6e-46 Leucine-rich repeat (LRR) family protein (.1) AT5G01890 171 / 1e-45 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002937 [exp] 640 / 0 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 572 / 0 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10006159 [exp] 224 / 4e-71 AT1G33590 179 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 231 / 1e-69 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 227 / 5e-68 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 217 / 5e-64 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10030526 [exp] 193 / 3e-53 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006160 [exp] 174 / 6e-53 AT1G33590 141 / 4e-41 Leucine-rich repeat (LRR) family protein (.1) Lus10012877 [exp] 189 / 4e-52 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098850 [exp] 629 / 0 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098900 [exp] 618 / 0 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 231 / 4e-69 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 210 / 8e-61 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 200 / 2e-57 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 184 / 4e-50 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 174 / 6e-47 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 173 / 2e-46 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 170 / 1e-45 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 169 / 5e-45 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002936 pacid=23164956 polypeptide=Lus10002936 locus=Lus10002936.g ID=Lus10002936.BGIv1.0 annot-version=v1.0 ATGAAGTCCCTCATCCTCATCCTCTCCTTACTCACCTTCCAATGCTTTGTCGCCACGTCTCGTGTCTGCAACGTGGACGACGAGGCTGGACTCTTATCCT TCAAATCAGGCATCACTCATGACCCGTCAGGTATGCTCTCCTCGTGGAAGGCTGGTACTGATTGTTGCACTTGGGCTGGTATCACTTGCCTCACCAATGA TAGGGTCACGGCTTTATCGCTTAGTGGGCAATCAAACAATCCGAATAGCTACTTATCGGGTACCATCTCGCCAACCCTCGCAAAACTAAAGGATCTCGAC GGACTTTACCTTTTGAATACGAAGAATATTACGGGTGAGTTTCCAATTTCTCTGTACGGCTTGCCCAAACTTTTATATGTATATTTGGACAACAATCAGC TATCGGGTCAAATACCAAGTGATATATTCAAGTTAGGATCCCAATTAGACGTATTGAGCTTACGAGGGAATCGGTTCACCGGGGCAATACCCGCATCTAT ATCCAGTTTAACCGGTCTGACCCGGTTGCAACTTGGCGGGAACTTGATCACCGGAAAACTACCGATCGGAATCCGCAGCCTTAAAAACTTGATCTTTTTG GAACTTGATAGTAACAAGCTCTCCCAACCCATACCAGAGATTTTCTCGTCTTTCAGTCAGCTCAGATATCTCAATCTTTCGCATAACCAATTTACCGGGA AAATCCCTTCCTCCATTTCATCTCTGGCCTCGTCGTTAGCTTACTTGGAGCTCGACCACAATTCCCTCACCGGTGAAATTCCTAGCTTCCTAGGAAACTT TCAGACGCTCGACACTCTAGATCTTTCCTGGAACAATCTCACAGGCACAGTACCAAAGACTTTCCAGAATCTGACTAAGATCTTCAATCTGGATCTTTCA CACAATTCCCTAGTCGATCCGTTCCCTGTTATGAACGTGAAAGGGATCGAGTCGCTGGATCTGTCGTACAACAATTTCAATTTGGGGAAGATCCCCAATT GGGTCACTTCTTCTCCGATTATCTACTCCCTGAAGCTGGCGAAATGCGGGATCAAAATTAATCTCACGAGTTGGAACCCGAAAGAGACCTACTTCTACGA CTACATCGATCTTTCGGAGAATCAGATCACCGGGAGCCCTGTTACGCTGCTGAACCGGACGGAGCTTCTGGTGGGGTTCTGGGCATCTGGAAACAAGTTG AGTTTCGATTTGGGGAAGTTGAAGATTGTGGAGACGTTGAAAGAGTTGGACTTGTCGAGGAATTTGGTGACTGGGGGAGTGCCCAGTTCGGTTTCGGGGT TAAAGAGGCTGAATTTGAGCAAGAACCATTTGTGCGGGAAGCTACCGCCGACCAAGTTTTCGGCGAGTTCGTTTGAAGGGAATGATTGTCTGTGTGGATC GCCTTTGCCTGTTTGTAAGAAGGGTTGA
AA sequence Show only first row Show all	>Lus10002936 pacid=23164956 polypeptide=Lus10002936 locus=Lus10002936.g ID=Lus10002936.BGIv1.0 annot-version=v1.0 MKSLILILSLLTFQCFVATSRVCNVDDEAGLLSFKSGITHDPSGMLSSWKAGTDCCTWAGITCLTNDRVTALSLSGQSNNPNSYLSGTISPTLAKLKDLD GLYLLNTKNITGEFPISLYGLPKLLYVYLDNNQLSGQIPSDIFKLGSQLDVLSLRGNRFTGAIPASISSLTGLTRLQLGGNLITGKLPIGIRSLKNLIFL ELDSNKLSQPIPEIFSSFSQLRYLNLSHNQFTGKIPSSISSLASSLAYLELDHNSLTGEIPSFLGNFQTLDTLDLSWNNLTGTVPKTFQNLTKIFNLDLS HNSLVDPFPVMNVKGIESLDLSYNNFNLGKIPNWVTSSPIIYSLKLAKCGIKINLTSWNPKETYFYDYIDLSENQITGSPVTLLNRTELLVGFWASGNKL SFDLGKLKIVETLKELDLSRNLVTGGVPSSVSGLKRLNLSKNHLCGKLPPTKFSASSFEGNDCLCGSPLPVCKKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	2.8	0.8939
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	4.9	0.8543
					Lus10023874 [exp]	4.9	0.8857
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10029114 [exp]	5.1	0.8522
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	6.9	0.8423
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	7.1	0.8984
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	13.0	0.8568
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	13.9	0.8586
AT4G25030			unknown protein		Lus10041414 [exp]	14.3	0.8715
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	17.5	0.8555

Compare expression of checked genes

Lus10002936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.