Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 559 / 0 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 487 / 4e-170 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 473 / 1e-164 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 467 / 3e-162 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 441 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 440 / 9e-152 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 211 / 1e-61 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 165 / 2e-46 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 164 / 7e-46 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G23120 162 / 5e-43 AtRLP38 receptor like protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002936 [exp] 629 / 0 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041064 [exp] 530 / 0 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10006159 [exp] 227 / 1e-72 AT1G33590 179 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 216 / 6e-64 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 211 / 5e-62 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 190 / 4e-54 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10030526 [exp] 184 / 4e-50 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 176 / 2e-47 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031824 [exp] 157 / 2e-43 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098850 [exp] 626 / 0 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098900 [exp] 618 / 0 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 214 / 9e-63 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 204 / 1e-58 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.007G016700 [exp] 199 / 8e-57 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 175 / 1e-47 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.006G237400 [exp] 174 / 5e-47 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.009G064300 [exp] 157 / 2e-43 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 154 / 3e-42 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.013G091000 [exp] 158 / 1e-41 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002937 pacid=23164954 polypeptide=Lus10002937 locus=Lus10002937.g ID=Lus10002937.BGIv1.0 annot-version=v1.0 ATGAACTCCTTCATTCTCTTCATCTCCATACTTACCCTGCAATGCCTCCAAGCAGCATCAAGTGGCTGTCACCCGGATGACGAAGCAGGTCTCTTAGAGT TCAAGGCGGGCATCACCCATGACCCGTCTGGTATGCTCTCCTTGTGGAAGCCTGGTACCAATTGTTGCGCTTGGCGTAGCACGACTTGCCTTGCTAGCGG TCGAGTCAACTCCATTTGGCTCACCGGAGATCCTAACAAACCTGATGCCTTCTTATCCGGTACGATCTCTTCCTCGCTCGCAAAGCTCGAGTTTCTCAAT GGACTTTACCTGATGAACTTGAGGAACATCACGGGCAAGTTTCCGGTTTCGTTATATGGGATGTCCCAACTCTATTACTTGTATTTGCAGAACGTTCCAT TCTCAGGTCGTCTGCCCATCGATGTAGGCAAGTTAGGACCTCAGTTGCATAGCTTAAACCTACAAGGAAACCACTTTACCGGAGCGATTCCTGCTTCCAT ATCCGAGTTAACGGGTCTAACTGAGTTGAACTTTGCCGACAACTCTCTCACCGGGAAATTCCCACTCGGAATTGGCCGCCTTGTAAGCTTGGAAACGTTA GACCTTCAGAACAACAAGCTCTCCAGACGGATACCTGAGATTTTCTGGTCTCTCCCTCAGCTCAGAACTCTCAAGCTTTCCAACAACAATTTTTCTGGGG AAGTCCCTAATTCCATTTCTTCTCTATCTGGAAACTTAGTTTACCTCGAGCTTGCGCACAATTCCCTCACCGGCGAGATCCCTAGTTTCCTGGGTAAATT TCTAGCGCTCGATACTTTAAACCTGTCCTGGAACAATTTCTCAGGCACCGTACCGAACTCGTTCAAAAACCTAACAAAGATCTTTAACCTTGACCTTTCT CACAATTCTCTCGTTGATCCCTTCCCTATCATGAACGTGAAAGGAATCGAATCCCTGGATCTATCCAATAACAATTTCCATTTGGGGAGAATTCCAGATT GGGTAACTTCGTCCCCGATTATTTACTCATTAAAGCTAGCGAAATGTGGGATCAAGACGAATCTGACGAATTGGAAGCCGAAACAGACGTACTTCTACGA TTACCTGGATCTATCGGCGAATCAGATCTGGGGGAGCCCGGTTTGGTTGCTGAATCAGACGGATTACTTGGTGGGGTTCTGGGCTTCGGGGAACAAATTG AGCTTCGATTTGAGGGAGCTGAGGATCGTCGGGACGATGAAGGATTTGGATGTATCGATGAACGCGGTGTTCGGAAGGGTGCCAAGCTCGGTTGCTGGAT TGGAGAGATTGAACGTCAGTTGGAACCATTTGTGTGGAAGGCTGCCGCCTACGAAGTTCCCGGCGAGTTCGTTTGAAGGGAATAATTGTCTCTGTGGCTG GCCTTTACCTCCTTGTAAGTAG
AA sequence Show only first row Show all	>Lus10002937 pacid=23164954 polypeptide=Lus10002937 locus=Lus10002937.g ID=Lus10002937.BGIv1.0 annot-version=v1.0 MNSFILFISILTLQCLQAASSGCHPDDEAGLLEFKAGITHDPSGMLSLWKPGTNCCAWRSTTCLASGRVNSIWLTGDPNKPDAFLSGTISSSLAKLEFLN GLYLMNLRNITGKFPVSLYGMSQLYYLYLQNVPFSGRLPIDVGKLGPQLHSLNLQGNHFTGAIPASISELTGLTELNFADNSLTGKFPLGIGRLVSLETL DLQNNKLSRRIPEIFWSLPQLRTLKLSNNNFSGEVPNSISSLSGNLVYLELAHNSLTGEIPSFLGKFLALDTLNLSWNNFSGTVPNSFKNLTKIFNLDLS HNSLVDPFPIMNVKGIESLDLSNNNFHLGRIPDWVTSSPIIYSLKLAKCGIKTNLTNWKPKQTYFYDYLDLSANQIWGSPVWLLNQTDYLVGFWASGNKL SFDLRELRIVGTMKDLDVSMNAVFGRVPSSVAGLERLNVSWNHLCGRLPPTKFPASSFEGNNCLCGWPLPPCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	1.4	0.8258
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	4.6	0.7392
AT1G78790			unknown protein		Lus10042781 [exp]	9.2	0.7189
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	14.4	0.7833
					Lus10007785 [exp]	15.7	0.6905
					Lus10040471 [exp]	15.9	0.6892
					Lus10016642 [exp]	17.1	0.6710
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	17.8	0.7395
AT2G04480			unknown protein		Lus10001750 [exp]	20.1	0.7371
					Lus10020449 [exp]	20.7	0.6327

Compare expression of checked genes

Lus10002937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.