Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48240 131 / 8e-39 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G63130 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 102 / 2e-27 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 99 / 4e-26 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT5G49920 76 / 1e-16 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 76 / 6e-16 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT4G05150 74 / 1e-15 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 73 / 3e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 73 / 4e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 73 / 4e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043341 [exp] 131 / 1e-38 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019490 [exp] 127 / 4e-37 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10026700 [exp] 103 / 1e-27 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10017947 [exp] 94 / 1e-24 AT5G63130 121 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10006214 [exp] 84 / 3e-20 AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10036862 [exp] 84 / 4e-20 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10002588 [exp] 84 / 8e-19 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 78 / 1e-17 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 77 / 1e-16 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083400 [exp] 139 / 6e-42 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G085000 [exp] 137 / 3e-41 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 113 / 2e-31 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.010G046400 [exp] 104 / 8e-28 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.004G032200 [exp] 81 / 8e-18 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 79 / 3e-17 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G006200 [exp] 77 / 7e-17 AT5G49920 188 / 3e-58 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 77 / 2e-16 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G190200 [exp] 75 / 7e-16 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 75 / 1e-15 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10002938 pacid=23164952 polypeptide=Lus10002938 locus=Lus10002938.g ID=Lus10002938.BGIv1.0 annot-version=v1.0 ATGGCGCCCGTCAAATTCCTCTGCAGCTACGGCGGCCAGATTCTCCCTCCCCGCTCCGGTGAATCCAAGCTTCGATATTCCGGAGGAACCACCAGAGTCC TCTCCATCGACCTCTCCTCCACTTCCTTCTCCGATTTCATGCTCAAACTCGCCGACTTCTGCGGCGCCGCCGTCGAGATGAGGTGCCAGCTTCCCAACGG AGATCTGGAGACGCTCGTTTCCGTCAGGTCCTTCGAGGAACTTTCCTCCGTCGTCGAGGAGTATGACCGTGTCTCTCCCGGTTCCAAGATTCGCGCAATT CTCTCCCCTCCAAAACCGCTCCATCATCGTCAGAACAAGAAGATCAAGGTCGTCTCGCCTCTGTCGTCCATTCCCGGTTTGGATTCTAATTCGTTCAAGA CACCCGTTCATCACCCGCTGCCGATGAGGTGTTATCCTGGTGACGTCGCTGTCGGACATCCCATCGGTCTTTACAATCACGATTCATTCGGATTCGGCTA CTGGTACGGATACGCGAATCCTGGGTTTTCGCATGGGAATCCTGTGGGTGATTGCTTGAGCTGGCGCAATTGA
AA sequence Show only first row Show all	>Lus10002938 pacid=23164952 polypeptide=Lus10002938 locus=Lus10002938.g ID=Lus10002938.BGIv1.0 annot-version=v1.0 MAPVKFLCSYGGQILPPRSGESKLRYSGGTTRVLSIDLSSTSFSDFMLKLADFCGAAVEMRCQLPNGDLETLVSVRSFEELSSVVEEYDRVSPGSKIRAI LSPPKPLHHRQNKKIKVVSPLSSIPGLDSNSFKTPVHHPLPMRCYPGDVAVGHPIGLYNHDSFGFGYWYGYANPGFSHGNPVGDCLSWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10002938 [exp]	0	1
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	7.5	0.6650
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	12.7	0.6419
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	23.1	0.6651
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10011357 [exp]	30.9	0.6630
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	70.2	0.6380
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	81.0	0.6309
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	87.5	0.6358
AT2G26820		ATPP2-A3	phloem protein 2-A3 (.1)		Lus10026891 [exp]	105.1	0.6097
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	113.4	0.6274
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	114.0	0.6007

Compare expression of checked genes

Lus10002938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.