Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1764 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 1742 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT2G21770 1731 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 1724 / 0 CESA5 cellulose synthase 5 (.1) AT4G32410 1333 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G17420 1315 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 1302 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 1296 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G44030 1211 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 1148 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003526 [exp] 2073 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 1971 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1839 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 1341 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1336 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10039607 [exp] 1315 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1311 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1308 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10022449 [exp] 1204 / 0 AT4G18780 1286 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076500 [exp] 1861 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G087500 [exp] 1858 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G194200 [exp] 1732 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1727 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.013G019800 [exp] 1524 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1493 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G029400 [exp] 1352 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1348 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G103900 [exp] 1346 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.006G181900 [exp] 1341 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10002939 pacid=23164966 polypeptide=Lus10002939 locus=Lus10002939.g ID=Lus10002939.BGIv1.0 annot-version=v1.0 ATGAACACTGGGGGTCGGCTGATTGCTGGTTCTCACAACAGGAATGAGTTCGTCCTCATCAATGCTGATGAAAGTGGCAGAATTAGATCCGTTCAAGAAT TGAGCGGACAGGTGTGTCAAATTTGCGGAGATGAGATAGAGATTACCGTGGATGGGGAGCTGTTCGTTGCTTGCAATGAATGTGCTTTCCCTGTTTGTAG GCCTTGCTACGAGTACGAGAGACGAGAGGGTACTCAGGCTTGCCCTCAGTGCCGAACGAGATACAAACGTCTCAAAGGTTGTCCTAGGGTGGAAGGCGAT GAAGAGGAAGATGACATCGATGATCTGGAGCATGAGTTTGACTATGGTAATCTTGAAGGTTTAACCTCTGAACAAGTTGCAGAGCTGATGCTTGCTGCAC GCCTTAACACTGGCCGTGGATCGCAAGTTAATGGCTCTGGCTATCCCGGGTTGGATCTTGATTCATCTCCTCCTGGTGCTAAAGTTCCTCTCTTGACCTA TGGCGAGGAGGATGCTGAGATTTCATCTGACCGACACGCTCTTATTGTCCCTCCTCATGTGGGTCATGCCAACAGAGTTCATCCAATGCCTTGCACTGAT CCATCTATACCTTTGCAACCGAGACCTATGGTTCCTCAGAAAGACATAGCAGTTTATGGTTATGGGAGCGTGGCGTGGAAGGACAGAATGGAAGAATGGA AGAGGAGGCAGAGTGACAAGCTTCAGGTGGTGAAGCATGAAGGTGTGAATGACGGTGGAAGCTTTGATGGGAACGAACTGGATGATCCTGATTTGCCAAT GATGGATGAAGGCAGGCAGCCACTTTCAAGGAAGTTACCCATTCCGTCTAGCAAGATTAGTCCATATAGGCTGGTTATCATTCTCCGTCTTGCAGTCGTG GCCTTGTTTTTCCACTATCGTATTCTCCACCCAGTCAAGGATGCATATCCCTTATGGCTGACATCAGTTATTTGCGAGATATGGTTTGCTGTATCATGGA TTCTTGATCAGTTCCCGAAATGGTGCCCTATAGTAAGAGAGACGTATCTGGATCGACTGTCATTGAGGTATGAAAAAGAAGGAAAACCGTCGGAGCTAGC TAGTGTTGACGTCTTTGTCAGTACGGTGGATCCCATGAAAGAACCCCCATTAATCACGGCGAACACTGTTCTTTCAATTCTCGCGGTTGACTATCCTGTT GAAAAGGTTGCGTGCTATGTTTCTGATGATGGTGCCGCTATGCTTACATTTGAGGCGCTCTCGGAGACGGCTGAATTTGCAAGGAAATGGGTTCCTTTCT GTAAGAAGTTTAATATCGAGCCTCGAGCTCCTGAATGGTATTTTTGTCAGAAGATGGACTACTTGAAGAACAAAGTCCATCCATCATTTGTCCGAGAAAG GCGTGCAATGAAGAGAGACTATGAAGAGTTCAAGATTAGGATAAATGGTTTGGTCTCTACAGCACAAAAGGTTCCAGAAGATGGTTGGACCATGCAAGAC GGGACTCCATGGCCTGGCAACAGCGTGCGGGATCATCCTGGGATGATTCAGGTATTCCTTGGCCATAGTGGTGTGCGTGATGTTGAAGGGAACGAGTTGC CTCGTTTGGTTTATGTCTCTCGTGAAAAGAGACCTGGGTTTGACCATCATAAAAAGGCCGGGGCTATGAATGCACTGGTACGAGTAGCAGCTGTTCTGTC AAACGCTCCCTATCTTTTGAACGTTGATTGTGATCACTATATCAACAATAGCAAGGCACTTAGGGAAGCTATGTGCTTCATGATGGATCCAACATCAGGG AAGAAAGTTTGCTATGTACAGTTCCCACAGAGATTCGATGGCATTGATCGACATGATCGATACTCCAACAGGAATGTAGTCTTCTTCGATATCAACATGA AAGGATTAGATGGGATACAAGGACCGATTTATGTGGGTACTGGGTGTGTTTTCCGGAGACGAGCACTTTATGGCTATGATGCACCTAAGACAAAGAAACC TCCTGGCAAAACCTGCAACTGTTGGCCCAAATGGTGCTGCCTGTTCTGCGGGTCTAGGAAGAATAAGTCAAAGGCTAAAAAGGATAGCAGTAAAAAGTCA AAGAACCGCGAAGCATCCTCCAAGCAGATACATGCTCTTGAAAATATTGAAGAAGGGAGAGAAGAATCAAAACCGATGAAGCCGTCAGAGACAAGCCAAG CCAAATTGGAGAAGAGGTTTGGACAGTCACCAGTGTTCATAGCAGCTGCACTTTTGGAAGATGGTGGCGTTCCTAGGAATGCTAGTCCTGCTTCCCTACT CAGAGAGGCCATCCAAGTTATCAGTTGTGGTTACGAGGATAAAACCGATTGGGGAAAAGAGGTTGGCTGGATATATGGTTCGGTTACAGAAGATATCCTG ACCGGATTCAAGATGCACTGCCATGGATGGCGATCTGTATATTGCATTCCCAAAAGGCCTGCGTTTAAAGGATCAGCTCCTATCAATCTGTCAGATCGTC TTCATCAAGTTCTTCGGTGGGCTCTTGGATCAGTGGAGATTTTCTTCAGCAGACATTGTCCGATCTGGTATGGATATGGTGGCGGTCTGAAGTGGTTGGA ACGGTTTTCATACATTAACTCGGTTGTTTACCCTTGGACTTCCATTCCGTTGTTGGTATACTGTACCTTGCCTGCCATCTGCCTTCTCACTGGGAAATTC ATTGTGCCAGAGATTAGCAACTATGCGAGTCTTGTGTTCATGGCGCTTTTCATATCGATTGCTGCAACTAGCATCCTCGAGATGCAATGGGGCAAAGTAG GTCTTGACGACGTATGGAGGAACGAGCAGTTTTGGGTGATAGGAGGCGTGTCGGCCCATCTATTTGCTCTTTTCCAAGGTCTACTCAAGGTATTAGCCGG AGTAAACACAAACTTCACCGTCACTTCGAAAGCAGCAGACGATGGAGAGTTCTCTGAGCTTTACATATTCAAGTGGACTTCACTCCTAATTGCTCCCACT ACCCTACTGATCATCAACGTGATAGGAGTTGTGGTTGGCATCTCCGATGCTATCAACAATGGCTACGACTCATGGGGTCCATTGTTCGGTAGGCTGTTCT TTGCAATCTGGGTGATTGTCCACCTTTACCCTTTCCTCAAAGGTCTGCTGGGGAAGCAAGATCGCATGCCCACCATCATCGTAGTGTGGTCGATCCTCCT TTCCTCTATATTGACTCTATTGTGGGTTCGAGTAAACCCGTTTGTGTCTCGTGATGGACCAGTTTTGGAGGTCTGTGGATTGAATTGTGTGTGA
AA sequence Show only first row Show all	>Lus10002939 pacid=23164966 polypeptide=Lus10002939 locus=Lus10002939.g ID=Lus10002939.BGIv1.0 annot-version=v1.0 MNTGGRLIAGSHNRNEFVLINADESGRIRSVQELSGQVCQICGDEIEITVDGELFVACNECAFPVCRPCYEYERREGTQACPQCRTRYKRLKGCPRVEGD EEEDDIDDLEHEFDYGNLEGLTSEQVAELMLAARLNTGRGSQVNGSGYPGLDLDSSPPGAKVPLLTYGEEDAEISSDRHALIVPPHVGHANRVHPMPCTD PSIPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKRRQSDKLQVVKHEGVNDGGSFDGNELDDPDLPMMDEGRQPLSRKLPIPSSKISPYRLVIILRLAVV ALFFHYRILHPVKDAYPLWLTSVICEIWFAVSWILDQFPKWCPIVRETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPV EKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKFNIEPRAPEWYFCQKMDYLKNKVHPSFVRERRAMKRDYEEFKIRINGLVSTAQKVPEDGWTMQD GTPWPGNSVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVAAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSG KKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRRALYGYDAPKTKKPPGKTCNCWPKWCCLFCGSRKNKSKAKKDSSKKS KNREASSKQIHALENIEEGREESKPMKPSETSQAKLEKRFGQSPVFIAAALLEDGGVPRNASPASLLREAIQVISCGYEDKTDWGKEVGWIYGSVTEDIL TGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKF IVPEISNYASLVFMALFISIAATSILEMQWGKVGLDDVWRNEQFWVIGGVSAHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYIFKWTSLLIAPT TLLIINVIGVVVGISDAINNGYDSWGPLFGRLFFAIWVIVHLYPFLKGLLGKQDRMPTIIVVWSILLSSILTLLWVRVNPFVSRDGPVLEVCGLNCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	1.0	0.9542
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	2.0	0.9410
AT3G01810			unknown protein		Lus10022341 [exp]	2.0	0.9078
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	4.6	0.9138
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	5.0	0.9076
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	6.7	0.8790
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	6.9	0.8974
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	8.9	0.8474
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	9.5	0.8915
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	11.0	0.8336

Compare expression of checked genes

Lus10002939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.