Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 562 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 557 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G09870 550 / 0 CESA5 cellulose synthase 5 (.1) AT4G39350 549 / 8e-180 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G44030 476 / 3e-152 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G05170 472 / 1e-150 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 464 / 4e-148 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 460 / 4e-147 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT2G25540 447 / 3e-141 CESA10 cellulose synthase 10 (.1) AT4G32410 445 / 2e-140 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006161 [exp] 840 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 738 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003525 [exp] 733 / 0 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 730 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10041063 [exp] 689 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10008226 [exp] 475 / 3e-159 AT5G44030 821 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) Lus10012198 [exp] 476 / 9e-152 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 475 / 1e-151 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 472 / 1e-150 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087500 [exp] 634 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 620 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 562 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 556 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 505 / 2e-163 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 505 / 5e-163 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G257900 [exp] 485 / 7e-156 AT5G44030 1526 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) Potri.006G052600 [exp] 482 / 1e-154 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 481 / 6e-154 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 481 / 7e-154 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10002940 pacid=23164965 polypeptide=Lus10002940 locus=Lus10002940.g ID=Lus10002940.BGIv1.0 annot-version=v1.0 ATGAACACTGGGGGGCGGCTGATTGCTGGTTCTCACAACAGGAATGAGTTCGTCCTCATCAATGCTGATGAAAATGGCAGAATTAGATCCGTTCAAGAAT TGAGCGGACAGGTGTGTCAAATTTGCGGAGATGAGATAGAGATTACCGTGGATGGGGAGCTGTTCGTTGCTTGCAATGAATGTGCTTTCCCTGTTTGTAG GCCTTGCTACGAGTACGAGAGACGAGAGGGTACTCAGGCTTGCCCTCAGTGCCGAACGAGATACAAACGTCTCAAAGGTTGTCCTAGGGTGGAAGGCGAT GAAGAGGAAGATGACATCGATGATCTGGAGCATGAGTTTGACTATGGTAATCTTGAAGGTTTAACCTCTGAACAAGTTGCAGAGCTGATGCTTGCTGCAC GCCTTAACACTGGCCGTGGATCGCAAGTTAATGGCTCTGGCTATCCCGGGTTGGATCTTGATTCATCTCCTCCTGGTGCTAAAGTTCCTCTCTTGACCTA TGGCGAGGAGGATGCTGAGATTTCATCTGACCGACACGCTCTTATTGTCCCTCCTCATGTGGGTCATGCCAACAGAGTTCATCCAATGCCTTGCACTGAT CCATCTATACCTTTGCAACCGAGACCTATGGTTCCTCAGAAAGACATAGCAGTTTATGGTTATGGGAGCGTGGCGTGGAAGGACAGAATGGAAGAATGGA AGAGGAGGCAGAGTGACAAGCTTCAGGTTGTCAAGCATGAAGGGGTGAATGACGGAGGAAGCTTTGATGGGAATGAACTGGATGATCCTGATTTGCCGAT GATGGATGAAGGCAGGCAGCCACTTTCAAGGAAGTTACCCATTCCGTCTAGCAAGATTAGTCCATATAGGCTGGTTATCATTCTCCGTCTTGCAGTCGTG GCCTTGTTTTTCCACTATCGTATTCTCCACCCAGTCAAGGATGCATATCCCTTATGGCTGACATCAGTTATTTGCGAGATATGGTTTGCTGTATCATGGA TTCTTGATCAGTTCCCGAAATGGTGCCCTATAGTAAGAGAGACGTATCTGGATCGACTGTCATTGAGGTATGAAAAAGAAGGAAAACCGTCGGAGCTAGC TAGTGTTGACGTCTTTGTCAGTACGGTGGATCCCATGAAAGAACCCCCATTAATCACGGCGAACACTGTATTCCTTGGCCATAGTGGTGTTCGTGATGTT GAAGGGAACGAGTTGCCTCGTTTGGTTTATGTCTCTCGTGAAAAGAGACCTGGGTTTGACCATCATAAAAAGGCCGGGGCTATGAATGCACTGGTACGAG TAGCAGCTGTTCTGTCAAACGCTCCCTATCTTTTGAACGTTGATTGTGATCACTATATCAACAATAGCAAGGCACTTAGGGAAGCTATGTGCTTCATGAT GGATCCAACATCAGGGAAGAAAGTTTGCTATGTACAGTTCCCACAGAGATTCGATGGCATTGATCGACATGATCGATACTCCAACAGGAATGTAGTCTTC TTCGATATCAACATGAAAGGATTAGATGGGATACAAGGACCAATTTATGTGGGTACTGGGTGTGTTTTCCGGAGACGAGCACTTTATGGATATGATGCAC CTAAGACAAAGAAACCTCCTGGCAAAACCTGCAACTGTTGGCCCAAATGGTGTTGCCTGTTCTGCGGGTCTAGGAAGAACAAGTCAAAGGCTAAGAAGGA TAGCAATAAAAAGTCGAAGAACCGCGAAGCATCCTCCAAGCAGATACATGCTCTTGAAAATATTGAAGAAGGGAGAGAAGTTGAACAGGTTGGCTGGATA TATGGTTCGGTTACAGAAGATATCCTGACCGGATTCAAGATGCACTGCCATGGATGGCGATCTGTATATTGCATTCCCAAAAGGCCTGCGTTTAAAGGAT CAGCTCCTATCAATCTGTCAGATCGTCTTCATCAAGTTCTTCGGTGGGCTCTTGGATCAGTGGAGATTTTCTTCAGCAGACATTGTCCGATCTGGTATGG ATATGGTGGCGGTCTGAAGTGGTTGGAACGGTTTTCATACATTAACTCGGTTGTTTACCCTTGGACTTCCATTCCGTTGTTGGTATACTGTACCTTGCCT GCCATCTGCCTTCTCACTGGGAAATTCATTGTGCCAGAGATTAGCAACTATGCGAGTCTTGTGTTCATGGCGCTTTTCATATCGATTGCTGCAACTAGCA TCCTCGAGATGCAATGGGGCAAAGTAGGTCTTGACGACGTATGGAGGAACGAGCAGTTTTGGGTGATAGGAGGCGTGTCGGCCCATCTATTTGCTCTTTT CCAAGGTCTACTCAAGGTATTAGCCGGAGTAAACACAAACTTCACCGTCACTTCGAAAGCAGCAGACGATGGAGAGTTCTCTGAGCTTTACATATTCAAG TGGACTTCACTCCTAATTGCTCCCACTACCCTACTGATCATCAACGTGATAGGAGTTGTGGTTGGCATCTCCGATGCTATCAACAATGGCTACGACTCAT GGGGTCCATTGTTCGGTAGGCTGTTCTTTGCAATCTGGGTGATTGTCCACCTTTACCCTTTCCTCAAAGGTCTGCTGGGGAAGCAAGACCGCATGCCTAC CATCATCGTGCCGCATGCCTACCATCATCGTGGTATATTGACTCTATTGTGGGTTCGAGTAAACCCGTTTGTGTCTCGTGATGGACCAGTTTTGGAGGTC TGTGGATTGAATTGTGTGTGA
AA sequence Show only first row Show all	>Lus10002940 pacid=23164965 polypeptide=Lus10002940 locus=Lus10002940.g ID=Lus10002940.BGIv1.0 annot-version=v1.0 MNTGGRLIAGSHNRNEFVLINADENGRIRSVQELSGQVCQICGDEIEITVDGELFVACNECAFPVCRPCYEYERREGTQACPQCRTRYKRLKGCPRVEGD EEEDDIDDLEHEFDYGNLEGLTSEQVAELMLAARLNTGRGSQVNGSGYPGLDLDSSPPGAKVPLLTYGEEDAEISSDRHALIVPPHVGHANRVHPMPCTD PSIPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKRRQSDKLQVVKHEGVNDGGSFDGNELDDPDLPMMDEGRQPLSRKLPIPSSKISPYRLVIILRLAVV ALFFHYRILHPVKDAYPLWLTSVICEIWFAVSWILDQFPKWCPIVRETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVFLGHSGVRDV EGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVAAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVF FDINMKGLDGIQGPIYVGTGCVFRRRALYGYDAPKTKKPPGKTCNCWPKWCCLFCGSRKNKSKAKKDSNKKSKNREASSKQIHALENIEEGREVEQVGWI YGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLP AICLLTGKFIVPEISNYASLVFMALFISIAATSILEMQWGKVGLDDVWRNEQFWVIGGVSAHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYIFK WTSLLIAPTTLLIINVIGVVVGISDAINNGYDSWGPLFGRLFFAIWVIVHLYPFLKGLLGKQDRMPTIIVPHAYHHRGILTLLWVRVNPFVSRDGPVLEV CGLNCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002940 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	1.0	0.9791
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Lus10028597 [exp]	2.4	0.9363
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10004702 [exp]	3.5	0.9197
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10002939 [exp]	5.0	0.9076
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	6.9	0.8468
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	7.1	0.8445
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	7.2	0.8695
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10007538 [exp]	7.4	0.8776
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	7.5	0.8694
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	8.1	0.9002

Compare expression of checked genes

Lus10002940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.