Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08780 52 / 1e-06 winged-helix DNA-binding transcription factor family protein (.1) AT1G14900 42 / 0.0005 HMGA high mobility group A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003527 [exp] 253 / 2e-79 AT5G08780 54 / 3e-08 winged-helix DNA-binding transcription factor family protein (.1) Lus10003525 [exp] 203 / 4e-56 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G069700 [exp] 99 / 4e-21 AT5G08780 83 / 3e-16 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Lus10002941 pacid=23164972 polypeptide=Lus10002941 locus=Lus10002941.g ID=Lus10002941.BGIv1.0 annot-version=v1.0 ATGTCCACCGATTACGTCCGTTGCTTCTCCTCCCTCTTCACCGCCACAATGCATTCGCCGGAGCCGCAGCCGCAGCCGCAACCATGGACGTCCAAGATCG ACGTCGACGCCATGGTCGAGGAAATGGCGGCGAAGAGAAAAGGTCCCGAGGTCAGCCGGAACCACGTCCTCCTCATTAAGAAGCTCCTAGCTTCGATCAA CTTCACTCCCGATCATCCCGTTTACCCCGTCATGATTGAGGAGGCGATTTCCAGCTTGAACGGCGGGAAGGGATGCAGTAAGGATGAAATTTCTGATTTT ATATCCACCAAACACACGGTTTCTCCTGTTGTGCATTTAGCGAGGTTACCTTTAGAGTTAGACAAGTGTGTTAGGGATGAGGTGATAGTGGTCACTTCAG GTAATCTGTATATTGCTCGAGCTGTAAATGCTGATGGGGGGAATGCTGGTTCTAGTGGCGGGGAACTAAAACGGTTTAGGCGTCGCCAGAAATTGAGAGG TGATGGTTGTAGTGGTAGTAAGTTGAGAAAGGAGAAACGTATCGATGATCCAATTGGTTCCACTGAGCTAGTTGTTGTGGGAGAGAAAGGTACTGAAGGA GGTAATCTTGTTATGGGCGAGGAGGACATACCCCCAGGGTTTGAAGGATGCATAAAACCAAATAATGGAATAAGTGAGCAATGTGTTGATGGGAGTGGTG ACAAGAGAGTTGTAGACAAGGTAGGAGAAAATGTTGGTTTAGTGAATCTGGAAGGACAATCAGCTGAAGAAGAAGTAAGTCCTTCGGAACGAGCATTGGT AGTAGTCCATGATCCGTTGGAATCCGAGGATCAAATTCAACCAACTCCGTTGTGTAGCTTGCCTACTGAAGACAACATTGAAGAAGATGCTACATTGAAG AAGTTGCATAAGAAAACCTGTGAGATCAAGAGACCAGAAGAAGAGGGAAAGATGATGCTTGAAGAGAAACATGACCAAGTGGTGAACAAGATTGATGATC TAAGTGCCAAAGTAGCAAAGCTCCGTGAAGAAAATCTGCAATTTGATGAAGCTGGGAACAAGAAACGTTGGTTTGAAGAGGCAAGTAAAGTTCTTGAGCA GTACAAGGAAATCTTAGAGCAGACAGAAGCACTTCAACAAACTCTGAAGGAGGTCATTGCTAAAGCAAGGGAAGTAAATGCGCCTAACAATGTTGCATCT GAGGCAGAGAGTTCAAAAGCGATGATGCAACACAGGCTGAGTAAAAAAACCAAACGTGTGAAATGGTCTCCAGAACTTGATATTACACTACCAGTGGAAT CTCGTCTGGATAAGATTCAAGTTCAAGAAGAAGCACGTCGGCCAATTCTAAAGATTAATATTCGCCCACCTCAGCAAAAGCATGTGCTGCCTATGGAGGA ACCATGCCAATCAAGTAAGCGGCAAAAACTGATTTGTGGGGTGGAAAATCAGATGCAATCTGGATGTCTCAGACGGGAATTAGTTTGTGGCCTCAGAATA CAGGACGAAGAGGACAGGTCTATAAATCGAAGGCTTTCTCACCCAGATCAGGTTCATTCTAGAGTTGCCAAGGGTCTTAATAGGACCACTGAACGGATGA AGCTTGAAATGAGCTGGAAATCAAAAGGCCCTAGACGTAGAAGACCCTGCATTAAGAGACCGAATGCCGAAGAATTCACAACCCTGGCTGGGAAATGTAC TCAGATGGACCTGCAGCTTCAGATCCAGGATTCTTCACAACCAGATGAGGCAATGCACAGAGATATGCCTTCGGAGCATGGAAGTCAGTTGCAAAATAAA GGAAAGGCACATGAAGACCTAGGATCGCAAATTCAACAGCCAATAGGGGGTAGTGATGAGAGAATCCTTCCTGAAGTAACTACTGTTCGTTCATGGGATC ATTCGGAACATCTGCCTAACGAGCAGCAACAAGTTGAGGACCAAGTGGCTTCGGAGTGGCGGTGTTCTGTTCTTTGTGAAGAAGAAGTTCAGAATCTGCT GGACCGATCTGATCATCCAGAGGAGAAGCAGCAACAATCTCCTGATGCTTTGGCAGGCAACACCGGAGCTGGAGTACTGTTGGATGAGCATAGGAAGTAG
AA sequence Show only first row Show all	>Lus10002941 pacid=23164972 polypeptide=Lus10002941 locus=Lus10002941.g ID=Lus10002941.BGIv1.0 annot-version=v1.0 MSTDYVRCFSSLFTATMHSPEPQPQPQPWTSKIDVDAMVEEMAAKRKGPEVSRNHVLLIKKLLASINFTPDHPVYPVMIEEAISSLNGGKGCSKDEISDF ISTKHTVSPVVHLARLPLELDKCVRDEVIVVTSGNLYIARAVNADGGNAGSSGGELKRFRRRQKLRGDGCSGSKLRKEKRIDDPIGSTELVVVGEKGTEG GNLVMGEEDIPPGFEGCIKPNNGISEQCVDGSGDKRVVDKVGENVGLVNLEGQSAEEEVSPSERALVVVHDPLESEDQIQPTPLCSLPTEDNIEEDATLK KLHKKTCEIKRPEEEGKMMLEEKHDQVVNKIDDLSAKVAKLREENLQFDEAGNKKRWFEEASKVLEQYKEILEQTEALQQTLKEVIAKAREVNAPNNVAS EAESSKAMMQHRLSKKTKRVKWSPELDITLPVESRLDKIQVQEEARRPILKINIRPPQQKHVLPMEEPCQSSKRQKLICGVENQMQSGCLRRELVCGLRI QDEEDRSINRRLSHPDQVHSRVAKGLNRTTERMKLEMSWKSKGPRRRRPCIKRPNAEEFTTLAGKCTQMDLQLQIQDSSQPDEAMHRDMPSEHGSQLQNK GKAHEDLGSQIQQPIGGSDERILPEVTTVRSWDHSEHLPNEQQQVEDQVASEWRCSVLCEEEVQNLLDRSDHPEEKQQQSPDALAGNTGAGVLLDEHRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	2.0	0.8894
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	2.6	0.8906
AT3G60830		ATARP7	actin-related protein 7 (.1)		Lus10029510 [exp]	3.9	0.8862
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	6.6	0.8804
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	11.0	0.8636
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	14.1	0.8772
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	16.5	0.8032
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	18.4	0.8455
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	20.8	0.8655
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	20.8	0.8566

Compare expression of checked genes

Lus10002941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.