Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62050 626 / 0 Ankyrin repeat family protein (.1) AT1G11740 497 / 3e-170 ankyrin repeat family protein (.1) AT3G24210 403 / 9e-134 Ankyrin repeat family protein (.1) AT1G04780 318 / 2e-100 Ankyrin repeat family protein (.1) AT3G04470 313 / 8e-99 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003524 [exp] 713 / 0 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 309 / 5e-97 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 308 / 1e-96 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 305 / 1e-94 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 310 / 4e-93 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 241 / 1e-71 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 219 / 2e-67 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10027960 [exp] 117 / 4e-28 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004500 [exp] 641 / 0 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 629 / 0 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 312 / 3e-98 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 312 / 4e-98 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 309 / 5e-97 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 304 / 4e-95 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10002942 pacid=23164957 polypeptide=Lus10002942 locus=Lus10002942.g ID=Lus10002942.BGIv1.0 annot-version=v1.0 ATGCACTGGAATACGCCCCCCCCGCGCCACCCCCCCCCACCCCCCCCCGCCGATTACCCTCACAGTCCCGTCCACTACGCCGTTGCTACCCGCGATCACA CTACTCTCTCCAGGCTACTCAAGTCCCTCCCTTCCAATCCCGACCCTTCCGATGAACGCATCTCCGACCAAATATCCGCCCTCCTCGACCGTCGTGACGT CCCCTTCCGAGAAACCCCTCTCCACCTCTCTGTTCGCCTCAACGACTCCTTCGCGGCCCGCTCCCTCTCAGGAGCAGGCGCCGACGTCTCCCTCCAGAAT TCCACTGGATGGAATCCTCTGCAGGAGGCACTCTGCCGCCGCCTCCCTGAAATCTCCTCCATTCTGCTCCGCCTCCACCACCGCTCCGCCTGGGCCAAAT GGCGCCTCCGCCTCCCTCGCCTCCTCTCCGCCCTCCGCAACATGCGTGACTTCTACATGGAGATATCGTTCCACTTCGAGAGCTCTGTCATCCCCTTCGT CGGCAAGATCGCCCCTTCTGACACTTACAAAATCTGGAAGCAAGACAGCAACCTCCGCGCCGATACTACTCTGGCCGGATTTGACGGATTAAAAATCCAG CGCGCCGACCAGAGCTTCCTCTTCCTCGGTGACGGCGATCACTCCCACGGAATCCCTTCCGGTTCCCTCCTTGTGCTAAACCACAGCGAGAGGAAAATCC ATGACGCCTTCGAGACAGCAGGAGCGCCATTGAGCGAATCGGACATCGCCGGATTCTGCTCCCAGACCAGCGTATACAGGCCAGGGATGGACGTCACAGA GGCTCAATTGGTCGGCCGGACAAACTGGCGGAGGCAAGAGAAGTTCGAGTCCGTCGGAGAGTGGAAAGCCAGAGTGTACGATGTTCACAACGTGGTATTC AGTTTTCGATCACGGAAGCTCATCAATTCCGAGAGCGATCAGCAGCAGGTATTGCCACTCGAATTAGACGAAGACGACGATGGCTTCTTAGTTGCAGAGA ATCCGAGTTTTTCGCTCGATCATAACGATCAAAGGAGGCGGCACAGCAGTTTCACGAGGGAAGATCGAGAGGTAGTTATGGTGGGGAGGAAGAGCGTGGA CATAATTCCATCTTCCTCTTTCTCATCAACTCCAAGGGGAGGGATTAAGAGACGGCCGCCGATAGTCGGAACGGTGCCGTTGCAGACGAAGGAGAAAGAG TACGTCCGGAGTTTAAGGCCGTCGGTTTGGTTAACGGAGCAATTCCCACTGAAGACGGAGGAGTTGCTGCCGTTGCTGGACATTTTAGTGAATAAAGTGA AGGCGGTGCGGAGGATGCGGGATTTGCTCACCACAAAGTTCCCGGCGGGAACATTTCCGGTGAAGGTGGCGATTCCGGTGGTGCCGACGGTGAGAGTGGT GATTACGTTTACCAAATTTGTGGAGTTGAAACCATTGGACCAGTTCTATACTCCATTGTCAAGTCCGAGCAAGCCAGAGGATGAATCTCAAAACCAGAGT GCAGCATCCAGATTGTCGTCATCGTGGCTTCGACGGAGCGGTGGTAAGCAGCAGCTGGCGTCAACTCAGACGACGGTGGAGGATCCATTCAGCATTCCCA CTGGATATACATGGACCAGCAGCCGGTCACCTGTAGTAGGAGGAGGAAATGGAGATGAAGATACGTCTGTGAAAGTGAAGAAATCGAAGTCTGTAAGGAG ATCGAAAGCAAGAAATTAA
AA sequence Show only first row Show all	>Lus10002942 pacid=23164957 polypeptide=Lus10002942 locus=Lus10002942.g ID=Lus10002942.BGIv1.0 annot-version=v1.0 MHWNTPPPRHPPPPPPADYPHSPVHYAVATRDHTTLSRLLKSLPSNPDPSDERISDQISALLDRRDVPFRETPLHLSVRLNDSFAARSLSGAGADVSLQN STGWNPLQEALCRRLPEISSILLRLHHRSAWAKWRLRLPRLLSALRNMRDFYMEISFHFESSVIPFVGKIAPSDTYKIWKQDSNLRADTTLAGFDGLKIQ RADQSFLFLGDGDHSHGIPSGSLLVLNHSERKIHDAFETAGAPLSESDIAGFCSQTSVYRPGMDVTEAQLVGRTNWRRQEKFESVGEWKARVYDVHNVVF SFRSRKLINSESDQQQVLPLELDEDDDGFLVAENPSFSLDHNDQRRRHSSFTREDREVVMVGRKSVDIIPSSSFSSTPRGGIKRRPPIVGTVPLQTKEKE YVRSLRPSVWLTEQFPLKTEELLPLLDILVNKVKAVRRMRDLLTTKFPAGTFPVKVAIPVVPTVRVVITFTKFVELKPLDQFYTPLSSPSKPEDESQNQS AASRLSSSWLRRSGGKQQLASTQTTVEDPFSIPTGYTWTSSRSPVVGGGNGDEDTSVKVKKSKSVRRSKARN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	0	1
AT1G62050			Ankyrin repeat family protein ...		Lus10003524 [exp]	1.0	0.9450
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	1.4	0.9140
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10010303 [exp]	3.3	0.8908
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	3.5	0.9080
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10009874 [exp]	4.5	0.9041
AT3G11640			unknown protein		Lus10016965 [exp]	5.5	0.8837
AT1G76660			unknown protein		Lus10016050 [exp]	5.5	0.8919
AT2G39870			unknown protein		Lus10040247 [exp]	5.7	0.9096
AT1G11915			unknown protein		Lus10023362 [exp]	7.3	0.8931
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	7.5	0.8469

Compare expression of checked genes

Lus10002942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.