Plant FIBer expression Database

Lus10002943 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11840 427 / 6e-152 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6)
AT1G67280 383 / 3e-134 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
AT1G08110 65 / 1e-12 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003523
[exp]
507 / 7e-180 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6)
Lus10043235
[exp]
387 / 2e-135 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10011115
[exp]
385 / 2e-134 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10038612
[exp]
319 / 1e-108 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Lus10000007
[exp]
146 / 2e-44 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6)
Lus10021429
[exp]
70 / 3e-14 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Lus10016138
[exp]
69 / 1e-13 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G013200
[exp]
450 / 2e-161 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6)
Potri.006G160600
[exp]
394 / 1e-138 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.018G084800
[exp]
392 / 9e-138 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.018G042100
[exp]
357 / 1e-123 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
Potri.009G007200
[exp]
72 / 1e-14 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Potri.006G239802
[exp]
0 / 1 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0104 Glyoxalase PF00903 Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence
>Lus10002943 pacid=23164975 polypeptide=Lus10002943 locus=Lus10002943.g ID=Lus10002943.BGIv1.0 annot-version=v1.0
ATGGCTGAAGCTGCAGCTGTCGCTACTCCTAGCGCTGAATTGTTGGAATTCCCCAAGAAGGACAAGCGTCGGATCCTCCACGCCGTCTATCGCGTTGGCG
ATCTTGATCGGACCATTCAGTTCTACACTGAAGGTCTGGGGATGAAGCTGCTTAGGAAGAGAGACATTCCAGAGGAGAAATACTCTAATGCTTTCCTTGG
TTTTGGTCCTGAGGATTCAAATTTCGTCGTCGAGCTGACTTACAATTATGGAGTGACCTCCTATGATATTGGGACTGGATTTGGGCACTTTGCTATTGCA
ACCCAAGATGTTTATAAGCTGGTAGAGAACGTTCGAGCTAAGGGTGGAAGTGTAACTAGGGAGCCTGGTCCAGTCAAAGGTGGAAACAGTGTCATTGCCT
TTGTCAAGGATCATGATGGTTACACTTTCGAGCTCATCCAAAGAGGTCCAACTCCCGAGCCTCTCTGCCAAGCCTTGGGGATGAAGCTGTTGAGGACAAT
TGATAGGCCGGAATACAAGTACACATTGGCCATGATGGGGTATGCCGAAGAGGTTGAGACAACTGTTGTGGAGTTGACTTACAACTATGGTGTGACTGAA
TACACCAAGGGAAATGCATATGCTCAGATTGCAATTGGCACAGACGATGTCTACAAAAGTGCCGAGGTTGTGAACCATGTGATACAAGAAGTCGGTGGCG
GGAAAATAACTCGGCAACCAGGACCCATTCCGGGGATCAACACCAAGATTACTTCTTTCCTAGACCCTGATGGCTGGAAAACTGTGTTGGTTGACAATGA
AGACTTTGTGAAGGAGTTGCAGTGA
AA sequence
>Lus10002943 pacid=23164975 polypeptide=Lus10002943 locus=Lus10002943.g ID=Lus10002943.BGIv1.0 annot-version=v1.0
MAEAAAVATPSAELLEFPKKDKRRILHAVYRVGDLDRTIQFYTEGLGMKLLRKRDIPEEKYSNAFLGFGPEDSNFVVELTYNYGVTSYDIGTGFGHFAIA
TQDVYKLVENVRAKGGSVTREPGPVKGGNSVIAFVKDHDGYTFELIQRGPTPEPLCQALGMKLLRTIDRPEYKYTLAMMGYAEEVETTVVELTYNYGVTE
YTKGNAYAQIAIGTDDVYKSAEVVNHVIQEVGGGKITRQPGPIPGINTKITSFLDPDGWKTVLVDNEDFVKELQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10002943
[exp]
0 1
AT1G16810 unknown protein Lus10026960
[exp]
1.0 0.9216
AT4G39520 GTP-binding protein-related (.... Lus10006801
[exp]
3.0 0.8964
AT2G35900 unknown protein Lus10021249
[exp]
3.2 0.8709
AT3G12050 Aha1 domain-containing protein... Lus10021072
[exp]
6.6 0.8997
AT3G07090 PPPDE putative thiol peptidase... Lus10038168
[exp]
7.2 0.8784
Lus10009043
[exp]
8.0 0.8003
AT1G08450 AtCRT3, PSL1, E... PRIORITY IN SWEET LIFE 1, EMS-... Lus10026849
[exp]
8.1 0.8092
AT3G43520 Transmembrane proteins 14C (.1... Lus10011926
[exp]
9.2 0.8266
AT3G03773 HSP20-like chaperones superfam... Lus10024119
[exp]
11.2 0.8093
AT1G04130 TPR2, AtTPR2 tetratricopeptide repeat 2, Te... Lus10025945
[exp]
11.5 0.7990

Lus10002943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.