Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) AT1G33475 218 / 8e-71 SNARE-like superfamily protein (.1) AT5G52990 83 / 1e-18 SNARE-like superfamily protein (.1) AT4G27840 82 / 3e-18 SNARE-like superfamily protein (.1) AT4G15780 54 / 1e-08 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 44 / 5e-05 ATVAMP727 vesicle-associated membrane protein 727 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003523 [exp] 459 / 3e-161 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10022397 [exp] 87 / 4e-20 AT5G52990 189 / 3e-59 SNARE-like superfamily protein (.1) Lus10036203 [exp] 49 / 1e-06 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 47 / 3e-06 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 44 / 5e-05 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 43 / 0.0001 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10034145 [exp] 43 / 0.0002 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10043431 [exp] 42 / 0.0002 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G094900 [exp] 313 / 4e-108 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.003G048600 [exp] 303 / 6e-104 AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) Potri.012G016400 [exp] 101 / 1e-25 AT5G52990 200 / 2e-63 SNARE-like superfamily protein (.1) Potri.015G012300 [exp] 101 / 2e-25 AT5G52990 192 / 3e-60 SNARE-like superfamily protein (.1) Potri.008G209100 [exp] 50 / 4e-07 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.010G239900 [exp] 49 / 8e-07 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 48 / 2e-06 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002944 pacid=23164951 polypeptide=Lus10002944 locus=Lus10002944.g ID=Lus10002944.BGIv1.0 annot-version=v1.0 ATGGAGAAGACAGTTCATTATTGCTGTGTCTCGAAGGCTAATCGAGCCATGTATGTGTACAGTAGGGGAGACCAAGAAGAGATTGAGCAGCTGGCTCAAC TGTGTTTAGTGAATGCACCTGGATACCACAGGTGGTATTTTGAAACCATAGGGAAAAGAACATTTGGGTTCTTGATGGAAGATGGTTATGTTTACTTGGC CATAGTTGATGAAGGCCTTAGGAATTCCAGCTTGCTCCGGTTTCTCGAGTACGTTAGAGACGAATTCAAGAAGGTAGCTAAAAAAGGTTCGAGGGGAAGC TTTTCAGGGCTGAACTCTGTCTTACAAGAGCAGCTAGTGCCTGTTATCAGTCAACTGATCAACTCGTTGGAGCATATTGCTTCCCGCGGCCATGAATGGA ACGGGTTGTTATCTCCTTCGACCAGTGGCGGCCAGATCGAGCTTGCCAATTGCACCAAGGCTCCGTTGTTGGGGAAGCAAGATAAGAAGAAGTCTAAGGA TCATGTGATCGCGATGCGGGGGGATGTTGATGATGAGCAGAAAAAATCTTCGAGCGAGTCAACCGTGTTAGATCCTAGCAATCTAAATGCTGGTTCTCCG CAGCAAAAGGATTCAGTCTCGACGAGGAGTATTAGACCAAGCTCTCAGACTATTCGGAAGAAGTGGTGGCGGCAAGTAAGGATTGTTCTTGCCATTGATC TTGTTATTTGCTTGGTTCTGTTCGGGATTTGGCTGTCGATCTGTGGTGGATTTGGATGCATCCGATGA
AA sequence Show only first row Show all	>Lus10002944 pacid=23164951 polypeptide=Lus10002944 locus=Lus10002944.g ID=Lus10002944.BGIv1.0 annot-version=v1.0 MEKTVHYCCVSKANRAMYVYSRGDQEEIEQLAQLCLVNAPGYHRWYFETIGKRTFGFLMEDGYVYLAIVDEGLRNSSLLRFLEYVRDEFKKVAKKGSRGS FSGLNSVLQEQLVPVISQLINSLEHIASRGHEWNGLLSPSTSGGQIELANCTKAPLLGKQDKKKSKDHVIAMRGDVDDEQKKSSSESTVLDPSNLNAGSP QQKDSVSTRSIRPSSQTIRKKWWRQVRIVLAIDLVICLVLFGIWLSICGGFGCIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	0	1
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	1.7	0.9463
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10004047 [exp]	2.2	0.9303
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Lus10030001 [exp]	2.4	0.9437
AT1G29040			unknown protein		Lus10013930 [exp]	3.5	0.9265
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	4.2	0.9302
AT1G04555			unknown protein		Lus10014458 [exp]	4.2	0.9403
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Lus10014117 [exp]	4.5	0.9309
AT2G37480			unknown protein		Lus10024420 [exp]	4.7	0.9149
AT5G05670			signal recognition particle bi...		Lus10030896 [exp]	6.6	0.9020
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	6.9	0.9133

Compare expression of checked genes

Lus10002944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.