Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31480 200 / 1e-57 SGR2 shoot gravitropism 2 (SGR2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003520 [exp] 283 / 3e-88 AT1G31480 1035 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10041056 [exp] 243 / 4e-73 AT1G31480 1115 / 0.0 shoot gravitropism 2 (SGR2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072300 [exp] 213 / 2e-62 AT1G31480 1168 / 0.0 shoot gravitropism 2 (SGR2) (.1) Potri.013G099700 [exp] 205 / 1e-59 AT1G31480 1154 / 0.0 shoot gravitropism 2 (SGR2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002946 pacid=23164977 polypeptide=Lus10002946 locus=Lus10002946.g ID=Lus10002946.BGIv1.0 annot-version=v1.0 ATGTATGGTTTGTTTTCCTCCAACATTGAGATGGAGAGGAATCCTCAAGCTTCTGTGGCAGCAACGCCTGATTTGCTGAGGAATACGCCATCCAGCATTG CGCGGTTGGAGGATGTGATAGAGCACTCGGAAGGTCGGCAGAAGTATCATGCACAGACTACAAGTCCCTCTGGTGGTGGTGATGTGAGATGGTATTTTTG TAAGGTCCCTCTAGCTCTAAAAGAGTTAGCTGCCTCAGTTCCTCACACAGAAGTAGTAGAAAAGGGGGAATATTTCCGGTTTGGAATGAGGGATTCTCTT GCGATTGAGGCTTCATTCTTGCAGGTTGTATACTTGTTCTCAAGGAGGAGGAGCTGCTTTCTGTGGTGGAAAGTATACGCAGAGTGTAGCGAAGGTCCAA GGCGCCGACCGTCTTCAAGCAAGAAGATAAATTTAGAAGCAGCTCATATGTTTGATGTGGAAGAGGAAAGAGTTGGTGTGCCTGTGAAAGGAGGACTTTA TCAGGTTCCTGTACGGCATGTGGTGTTCTTGGTTCATGGTATTGGTCAAAGGTTGGAGAAATCTAATTTGGTGGATGATGTTGGCACTTATCGCCACATT ACTGCAAGTCTTGCTGAACGCCATTTAACTTCTCACCAACTCGCTGCACAGCGAGTCCTCTTTATTCCATGCCAGGTGATATCATCTATGGCTTATCGTG CCAAAACAGAAAGTAAGGAAATACCTTCAATGGAACAGAACCAGTCGACCTATAAGAATACACATACCAACCACCAAAGTGAACCACAGAAATACACTCC AAACATCAAGTACACGAAACTCGAGTTCAAGGTTAAAGTTCTTACAATCTGCCAGTCGAAAACTGAAAAGGTCTCAGATGAAAGAGAGGAAAATGTTGAA GAAAACAGAGAGAGAACGTACGGCTCTCTCATGATAGAGAGGTTGACTGGACAGAAGGGAGAATAG
AA sequence Show only first row Show all	>Lus10002946 pacid=23164977 polypeptide=Lus10002946 locus=Lus10002946.g ID=Lus10002946.BGIv1.0 annot-version=v1.0 MYGLFSSNIEMERNPQASVAATPDLLRNTPSSIARLEDVIEHSEGRQKYHAQTTSPSGGGDVRWYFCKVPLALKELAASVPHTEVVEKGEYFRFGMRDSL AIEASFLQVVYLFSRRRSCFLWWKVYAECSEGPRRRPSSSKKINLEAAHMFDVEEERVGVPVKGGLYQVPVRHVVFLVHGIGQRLEKSNLVDDVGTYRHI TASLAERHLTSHQLAAQRVLFIPCQVISSMAYRAKTESKEIPSMEQNQSTYKNTHTNHQSEPQKYTPNIKYTKLEFKVKVLTICQSKTEKVSDEREENVE ENRERTYGSLMIERLTGQKGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	0	1
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10034919 [exp]	3.5	0.8515
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	4.2	0.8695
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	4.2	0.8620
AT3G27930			unknown protein		Lus10008782 [exp]	5.7	0.8461
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033341 [exp]	7.3	0.8217
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	7.5	0.8436
AT3G58590			Pentatricopeptide repeat (PPR)...		Lus10020138 [exp]	8.5	0.7848
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	9.0	0.8614
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	9.6	0.8589
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	9.8	0.8454

Compare expression of checked genes

Lus10002946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.