Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10070 312 / 3e-95 KH domain-containing protein (.1) AT1G33680 269 / 8e-79 KH domain-containing protein (.1) AT2G25970 189 / 5e-51 KH domain-containing protein (.1) AT5G04430 71 / 7e-13 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT5G50940 66 / 2e-11 RNA-binding KH domain-containing protein (.1) AT5G15270 56 / 7e-08 RNA-binding KH domain-containing protein (.1.2) AT3G04610 56 / 8e-08 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT1G14170 53 / 8e-07 RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 51 / 3e-06 RNA-binding KH domain-containing protein (.1) AT5G64390 50 / 6e-06 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003519 [exp] 1006 / 0 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10004445 [exp] 183 / 1e-51 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10020998 [exp] 183 / 1e-49 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 182 / 2e-49 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10013531 [exp] 127 / 2e-30 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10037932 [exp] 71 / 6e-13 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10038665 [exp] 68 / 6e-12 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10033557 [exp] 63 / 3e-10 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 62 / 1e-09 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072500 [exp] 425 / 1e-137 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.013G099800 [exp] 417 / 5e-135 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.018G055300 [exp] 186 / 1e-49 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 181 / 5e-48 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.017G085500 [exp] 66 / 8e-11 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G230500 [exp] 63 / 2e-10 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 59 / 4e-09 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.004G123400 [exp] 59 / 7e-09 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 59 / 1e-08 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 56 / 1e-07 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10002947 pacid=23164961 polypeptide=Lus10002947 locus=Lus10002947.g ID=Lus10002947.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAAGAGGTTGCAGCCCCACCGGCGCCTTCGAGCCCTGCACTCCTTCCGGATCACAAGCGGAAGCATGACGAGTTTGAGGAACAGCTATCCA TCGAAGCTCTTCGCTCTGAGGATGAGAAGAAGTCCGGCGATGTTGTGGAGGAAGAAAAGGAGGACCTTGATTCGTCTGCAATCGATGCGGATTCGCAGGA GGCTAAGCGGGCTAGGGTTGATGATAAGACTTCGGATGAGCCAGTTGGGCAGAACGGTTTTGGGGAAGTCAAGTCAGATGAAGATTCTAAGGGGCATGTT GATGAGCAAAATGGTAAGACTGAACTGCAGGAAGAGAGTGATCCTCAACCTGCTTCAGAGGGTGCTCAACCTGCCTCAGATGTCGCTCCAGAGACCGCAG AGCACAATAATGAGGAAGTAGTTGGCGAAGAAGCTGATGATATAGATGATAAGAAGACTGCTGAAAACAAACTAGAACCGGCAGAGGGCATCGAGCTTGG TAAAGCCGAGGAGCTCTCAAAACGGGAAGATGAGCAACTGAGACAAGATGCTGAAGAAACTGTATCTGACGGTCAGACTACCTCTCGAAAGACGGAAGTT CCTAATGATAAGGTTGGAGTTCTTATTGGCAAGGGTGGGGATACTATTCGTTTCCTCCAGCAAAATTCTGGGGCAAAAATTCAGATAATGAGGGATGCAG AAGCTGATCCTCGTTGCACAACAAGGCCAGTGGAAATCATAGGCACACTAGCTAGTATAAGCAAGGCTGAGAAGCTGATCCATGCTGTTATAGCCGAGGC TTCTGTTGGGGGTTCCCCTTCACTTGTAGCAAGGGGCCATCCTAGTGCTCAGTCTACTGGAGTTCCAGACCAACTCGAGATGCAAGTTCCAAATGAGAAG GTTGGTTTAATCATAGGAAAAGGTGGAGAAACTATCAAGGGCCTCCAAACAAAAACTGGAGCGCGTATTCAGTTAATTCCTCAACATCTTCCTGAAGGAG ATGGATCAAAAGAAAGGACTGTGCGTGTGACTGGTGATAGGGCTCAAATTGAAATGGCAAGAGAACTGATTAAGGAAGTTATGAGTCAGGATGTGAGGCA ATCATCAAATTCCGGCGGTTATAACCAGCAGCAATCGTACAGATCTCGTGGACCCAATGACAGGGGCCATTATGGTCCTCGAGGACCTCATCCGGCACAA CCGATGCCTTACGATTATCACCAACGAGGACCATATCCGCCTCATGGCATGCACTACCCTCCGCCTCCCAGTTACGGAAATTACCCACCCCAACACATGG GTCCACGAAGTAACTATGGTTCGGGTTGGGAGCAGCGACCTCCCCCACCAAGTAGCGGCGGTTATGATTACTACGGAGGTCAGAGAGGACACATGTCCGA CCACCCCTCATCTGCACCTGTTTCCAGGCACCACCCTCACGGTCCTGCTCCTGCCATTGGTCCTCCGTCGTCACAGACAAATTATGGTTACGGGCAGCCT CAGCCTCACGGGTCTGATTATGGTAATCAAGCTTCTTATTCACAGCCGGTACCTCAACAAGGCTATGACAATCATGCTCCAGTGCACAATCATTACGGAC ATGCCAGCTCTCAGTCAGGTTATCCACCTGCAGCTTATCAACAGTACGGTAAGCAACCATCTTATGGCATGCAAGCAGCACCAGGTCAGCAGCCACCTCA GCAATATTCCGCTAGCCAGCCATATGGTCAAGGTGCAGCAGCAACTCAGCAGCAATATCCTTACACATCTACTGCTCCGGTTCAACAAGGATATCCTCCA TATGGTGCCGCAACTGCCACGGCTGCTGATGGCTATAATCAAGCCGCTCCTCCTGCTTCAGGCTTGGGATTTCCTCCACAGGCCTACGGCCAAACTGCCG GACAGCAACCAGCAGCTCAACAAGGGTATCCTCAGCAGGCTGGCTATGCACAAGGTACTGCTGCAGCTTCCTACGGATCATACCCGGTTTCGCAAGGGTA TCCAGATCAGGCCACTTCCAATGCTGCTGGTTATGGATATCAAGCACAAGATCCTTCTTATGCACAACCTGCTGCTGGATCAACGTACGGTGCACAACCA ACTGCTGGATCAACGTACGGTGCACAACCTGCTGCTGGTCAACAACAGGTTTACACTCAACCAACAGCAACGCCAGCACCAACGCAACCGAGTTACGACC AGTCTGTCCCACAATCAGGTAGCTACCCTGCCCTTGCTGCTCCTGGGAGCACTCCATCTCAGCCTGCAGCAGCGTATCCCCAATATGATTCTGCCCAGAT GCATGCTGCACCTCATTGA
AA sequence Show only first row Show all	>Lus10002947 pacid=23164961 polypeptide=Lus10002947 locus=Lus10002947.g ID=Lus10002947.BGIv1.0 annot-version=v1.0 MAEEEVAAPPAPSSPALLPDHKRKHDEFEEQLSIEALRSEDEKKSGDVVEEEKEDLDSSAIDADSQEAKRARVDDKTSDEPVGQNGFGEVKSDEDSKGHV DEQNGKTELQEESDPQPASEGAQPASDVAPETAEHNNEEVVGEEADDIDDKKTAENKLEPAEGIELGKAEELSKREDEQLRQDAEETVSDGQTTSRKTEV PNDKVGVLIGKGGDTIRFLQQNSGAKIQIMRDAEADPRCTTRPVEIIGTLASISKAEKLIHAVIAEASVGGSPSLVARGHPSAQSTGVPDQLEMQVPNEK VGLIIGKGGETIKGLQTKTGARIQLIPQHLPEGDGSKERTVRVTGDRAQIEMARELIKEVMSQDVRQSSNSGGYNQQQSYRSRGPNDRGHYGPRGPHPAQ PMPYDYHQRGPYPPHGMHYPPPPSYGNYPPQHMGPRSNYGSGWEQRPPPPSSGGYDYYGGQRGHMSDHPSSAPVSRHHPHGPAPAIGPPSSQTNYGYGQP QPHGSDYGNQASYSQPVPQQGYDNHAPVHNHYGHASSQSGYPPAAYQQYGKQPSYGMQAAPGQQPPQQYSASQPYGQGAAATQQQYPYTSTAPVQQGYPP YGAATATAADGYNQAAPPASGLGFPPQAYGQTAGQQPAAQQGYPQQAGYAQGTAAASYGSYPVSQGYPDQATSNAAGYGYQAQDPSYAQPAAGSTYGAQP TAGSTYGAQPAAGQQQVYTQPTATPAPTQPSYDQSVPQSGSYPALAAPGSTPSQPAAAYPQYDSAQMHAAPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	0	1
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	1.4	0.9233
AT3G53320			unknown protein		Lus10023170 [exp]	2.6	0.9083
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	2.8	0.9256
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	3.9	0.9208
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	4.5	0.9022
AT4G16100			Protein of unknown function (D...		Lus10016842 [exp]	4.6	0.8828
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	5.7	0.8759
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	7.7	0.9167
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	8.1	0.9016
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	10.1	0.8872

Compare expression of checked genes

Lus10002947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.