Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71440 160 / 2e-47 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003518 [exp] 207 / 9e-65 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072700 [exp] 170 / 5e-51 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002948 pacid=23164976 polypeptide=Lus10002948 locus=Lus10002948.g ID=Lus10002948.BGIv1.0 annot-version=v1.0 ATGAATCTTGATGATGCGAAATCATTTGCACTTTGTATTCAGTGGAGTGATTATGTTTATCAATCCAAAGGAATTCATATTTGTCATGAACTTCCTACAA GGTTCGCAGAGCTAAAGCTTCTTCACAGTATCGAAGATGAAAGACCATCGATTGAGCCCTCCGGCCCTCAGAAGATGGCTACTGGATTATTGTCAATCAC CCTCAAGTGTGTGGGTGCTTCCATGGGCGAGAAAGCTCCAATGACAAAGAAGCTACCTGCCTCGACGACGGCTGGCAAGCTAAAGATTCTCTGTGAAAGC TTTTTCAAACTCAGATCAGTCAAGCTGAGACTTTTCCTAGAGGAAGAGGGCTGTCCTTTGCCGGTACTACTAGACGACGAGATGGCCACACTGCTGGATG TTGGTGCTGGCAATGGATCCACCATTATTTTGGATGAAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10002948 pacid=23164976 polypeptide=Lus10002948 locus=Lus10002948.g ID=Lus10002948.BGIv1.0 annot-version=v1.0 MNLDDAKSFALCIQWSDYVYQSKGIHICHELPTRFAELKLLHSIEDERPSIEPSGPQKMATGLLSITLKCVGASMGEKAPMTKKLPASTTAGKLKILCES FFKLRSVKLRLFLEEEGCPLPVLLDDEMATLLDVGAGNGSTIILDEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002948 [exp]	0	1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	21.5	0.7713
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10001724 [exp]	89.4	0.6930
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024197 [exp]	102.3	0.7009
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10020260 [exp]	106.0	0.7039
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	150.9	0.7022

Compare expression of checked genes

Lus10002948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.