Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71440 503 / 2e-176 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) AT3G10220 53 / 1e-07 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003518 [exp] 784 / 0 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Lus10042405 [exp] 55 / 2e-08 AT3G10220 376 / 2e-133 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Lus10026266 [exp] 54 / 5e-08 AT3G10220 378 / 2e-134 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072700 [exp] 602 / 0 AT1G71440 646 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1) Potri.006G041400 [exp] 54 / 5e-08 AT3G10220 388 / 3e-138 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1) Potri.005G007900 [exp] 46 / 4e-05 AT1G74170 430 / 5e-132 receptor like protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF01302 [flax] [poplar] CAP_GLY CAP-Gly domain
Representative CDS sequence Show only first row Show all	>Lus10002949 pacid=23164959 polypeptide=Lus10002949 locus=Lus10002949.g ID=Lus10002949.BGIv1.0 annot-version=v1.0 ATGGCGAGCTTCAAACTCAGCCAGCGAGTCCACTCAGTGGGCGATTCCCGCCGAATTGGCACCGTCAAGTATGTAGGAACAGTGGAAGGCTACTCCGGCA CTTGGGTCGGCGTGGATTGGGACACCGGCGACGGCAAACACGACGGGACTGTGAACGGAACTCGTTACTTCCAAGCTAGATCGGACCGTTCTGGTTCTCT GGTTCGGCCACATAATTTGAGTTGCGGAATTTCGTTCCTTGAAGCTCTGTGCATCAGGTACAAAGGCCAGGCCACTAAAGAAGAAGAAGAGGGTATGTAT GTGCTTTCGGCTAGGAATAGAAAGGTGTCTGTAGAATTCGTCGGTAAAGAGAAGATTCAAGATAAGCTGAGCCGGTTTGAGGAGCTCACCAATGCGTCTC TGTCATTTCTTGGTGTCAGTACTCCTGGTTCATCAACAGAGATTGGTTCTACTTTGCCAAATATAAGGGAGTTGGACTTGACTGGAAATTTGCTTTCGGA ATGGAAGGATATAGGGACCATATGTGAGCAATTGCCATCCCTTACAGCGCTCAACTTGTCTCACAATTTGATGGCAGATGTCGTTGTTGGCCTACCGCGA TTAGGTAGGATCCGTACTCTGGTTTTGAACTGTACTGGTGTGAAATGGACACAGGTAGAAGAACTTGAACATCTGTTGCCAGTAATAGAGGAGCTGCACC TTATGGGGAATGGTATAAGTGAAATTAAGGCAACATCTTCAGTTCAAAGATTTGAATCCTTGCGGCTTCTGAATTTGGAAGATAACTGTATAACCGAGTG GAATGAAATCATAAAGATTTCCATGTTGAGAAGCTTAGAGCATCTTCAGTTGAACAAGAACAGGTTGAAGAATGTCTTCTATCCAGATGATGCAACAGTA AAGAAAATGTTAAATGGTTCCGAATCTCAAAAGAAATGTTGTATTCCTTTTGAGAACCTCCGTTGTCTTCTCTTGGCAAGTAACAACATTGGGGATCTCG CATCAATTGACTCACTGAACTTGTTCCCCAACCTGATGGATATCAGAATATCTGAAAATCCAATAACCGAACCCTCAAGTGGTGGTATTCCAAGATATGT TCTGGTTGCACGATTGTCCAAGATTGAACTGCTGAATGGAAGTGAGATCCGTGCTCGTGACAGGAAGGAATGTGAGATTCGGTATGTTCGCTTAGTTATA TCGCAGCTGCATGGCAACCCGGATGAAATTAAACAACTTCATCCAAGGTAG
AA sequence Show only first row Show all	>Lus10002949 pacid=23164959 polypeptide=Lus10002949 locus=Lus10002949.g ID=Lus10002949.BGIv1.0 annot-version=v1.0 MASFKLSQRVHSVGDSRRIGTVKYVGTVEGYSGTWVGVDWDTGDGKHDGTVNGTRYFQARSDRSGSLVRPHNLSCGISFLEALCIRYKGQATKEEEEGMY VLSARNRKVSVEFVGKEKIQDKLSRFEELTNASLSFLGVSTPGSSTEIGSTLPNIRELDLTGNLLSEWKDIGTICEQLPSLTALNLSHNLMADVVVGLPR LGRIRTLVLNCTGVKWTQVEELEHLLPVIEELHLMGNGISEIKATSSVQRFESLRLLNLEDNCITEWNEIIKISMLRSLEHLQLNKNRLKNVFYPDDATV KKMLNGSESQKKCCIPFENLRCLLLASNNIGDLASIDSLNLFPNLMDIRISENPITEPSSGGIPRYVLVARLSKIELLNGSEIRARDRKECEIRYVRLVI SQLHGNPDEIKQLHPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10002949 [exp]	0	1
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	4.7	0.7839
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10035553 [exp]	10.8	0.7747
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	16.0	0.7276
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	20.4	0.7505
AT2G29200		APUM1	pumilio 1 (.1)		Lus10000515 [exp]	20.4	0.7748
AT3G10650		AtNUP1	unknown protein		Lus10028861 [exp]	22.8	0.7528
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	29.3	0.7611
AT3G17900			unknown protein		Lus10036712 [exp]	30.3	0.7443
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	31.4	0.7038
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	33.0	0.7426

Compare expression of checked genes

Lus10002949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.