Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1190 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 1149 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 1074 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 835 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003517 [exp] 1828 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10023340 [exp] 1045 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 1026 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 842 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 208 / 7e-61 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G072800 [exp] 1355 / 0 AT5G49900 1219 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.004G227200 [exp] 1176 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G003400 [exp] 1169 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 852 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF04685 [flax] [poplar] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [flax] [poplar] Gal_mutarotase PF12215 [flax] [poplar] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Lus10002950 pacid=23164964 polypeptide=Lus10002950 locus=Lus10002950.g ID=Lus10002950.BGIv1.0 annot-version=v1.0 ATGGTGATCGAGAATGGTTTCATCAAAGAACGAGACAACAAGGCTGCTGCTACAAAGATGGTGGATCCAGGGAAGCCACCTGCATTGACATGGCAAAGAA AGCTGAAAGATGAACCAGTTCCTCCTTTGCCATTCAGCCTTGCTTTCAAAGATATTGCTCATATGCTTCCAATAGGGGTGAGGCTGATTCGTCACACGAA GGCCGAAGCTGCAGAAGGAAGGGAAACCATATTCGATTTCCTCAGAACGCATCATGTCACTGGTGATCACGGTCTCCCTTTAGGCAGTATCGGAACAGGA AGCATTGGAAGAAGCTACAAAGGAGAGTTCCAGCATTTCAAGCTACTGCCTTTAGTACACGAAGAAAAACCGGTTTTAGCTAACCAATTCTCCGCCTTTG TTTCTCGTCCCAATGGAAAGAAGTCATCGTCTGTTTTATGCTCGAGGAAGCCCGAGTTCCCAGCCAAGCCCGGTTCTGGGATCGAGTCATGGGATTGGAA TCTTGCCGGTGACAAGAGTACATACCATGCTTTGTTTCCCAGGGCTTGGACATCTTATGATGGCGAACCTGATCCAGATCTCAGAATTGTGTCTCGACAG ATGTCGCCTTTCATTCCTCACAACTACAAGGAGAGCAGCTTTCCAGTAACCGTGTTCACATTTACGCTGTACAATACTGGAAAGACCTCTGCAGATGTCA CCTTGCTCTTCACTTGGGTAAATTCACTTGGTGGGCAATCAGGATTTACAGGTCAACATTACAACACAAAGATGAAGACAAAAGATGGAGTTCATGGAGT TATCTTAAACCACAAGACAGCAAAGGGACACCCTCAACTCACATTTGCAATGGCAGCTCAGGAAACAGACGATGTCCGAGTATCCGAATGCCCTTACTTC CTCGTATCGGGACCCTCGAAATCAAGTGGAATCACAGGGAAAGACATGTGGGACGAGATCAAAACGCACGGAACATTCGATAACTTGTGCTGCAAGAATC TACCTTCAGTACCCGGGTCATCAATTGGAGCAGCCATAGCAGCTTCTGTTACTGTCCCTTCTGGTTCTGTCAAAACCGTCACATTTTCGTTAGCATGGGA CAATCCAGAAGTCAGATTCAGTGGGAAAAGTTACTACAGGCGTTACACCAAGTTCTACGGTTCTTTAGGGGACGCTGCAGCGAAGCTGGCTCGTGATGCG ATTCTTGAGCATGCTGATTGGGAGGCTCAGATAGAAGCATGGCAAAATCCCATCCTTGAAGACAAAAGGCTACCAGAATGGTATCCAGTCACTCTCTTGA ATGAACTCTATTACCTAAATGCTGGCGGGACGATATGGACCGATGGATCACTTCCACTGCAAAGCTTAACATCAATCAGAGACAGAAAGTTCTCCCTGGA CGGATCGATCCTCGAAATGAAGCACCAAAACAACTACCATGCTACAAAAAATGACACGGCAGTTGAAATCCTGGAGAGGATGGTGTCGACCTATGAGCAA ATGAACGACAGAACAACATCATCTTCGAACCCAGCTTTCGGGACATACTTGATGAATAAAGGAGAAGAAAACGTTGGAAACTTCCTCTACCTCGAAGGCT CCGAGTATCTCATGTTCAACACCTATGACGTCCACTTCTACTCGTCCTTCGCGATCCTCATGCTGTTCCCAAAACTGGAGCTAAACTTCCAGAGGGACTT TGCAGCAGCTGTGATGATGCATGATCCCACCAAGATGCAGATCATGAGCGACGGGAGGGTGGTTCCAAAGAAGATGCTTGGTGCGGTCCCACACGATATG GGGCTTAACGATCCGTGGTTCGAGATGAATGCCTATAACTTGTTCAGCACGGCAAGGTGGAAAGACTTGAACCCCAAGTTTGTTCTGCAGATATATAGAG ATGTTGTGGCTACTGGGGATATGGGGTTTGCTAGAGCTGTCTGGCCTTCAGTGTACATGGCGATGGCGTATATGGAGCAGTTCGATAAAGATGAGGATGG GATGATCGAGAACGAAGGGTTCCCTGATCAGACTTATGATGCTTGGCCTGTTCATGGTGTGAGCTCCTACTGTGGTGGACTCTGGGTGGCTGCATTACAG GCTACTTCTGCGTTGGCTCGCGTGATTGGTGAAGAGGATTCGGCGAAATACTTCTGGATGAGGTACCAGGAGGCTAAAGGTGTGTATGAGAAGCTTTGGA ATGGGTCATACTTTAACTATGACAGCAGTGGCAATCCTTCCATCCATGCTGATCAGTTATCTGGTCAATGGTATGCAAGAGCCACGGGGCTTTCGCCGAT TGTGGACGAGGAGAAAGTGAAGAGTGCACTTGAGAAGATATACAACTACAATGTGATGAAGTACAAAAGAGGGACAAGGGGAGCAGTGAATGGGATGCTA CCAGATGGAAGAGTTGATACGTCGGGAATGCAGTCCAAGGAGATATGGCCCGGAGTCACATATGCACTTGCTGCCTCCATGATTCAGGAACAAATGGTTG ATATTGGCTTCAACACAGCCTCTGGTGTCTATCAAGCCGCCTGGTCCGAATCAGGCCTCGGATACTCATTCCAAGTCCCAGAAGGGTGGAACACAGATGA AAAGTACAGGTCACTTTGCTACATGAGACCATTGGCAATATGGGGGATGCAATGGGCACTCACAAGGGAAAAAGTCATCAACGAAGGAGGCGTTGTTGTT CTTGATCAACCGTCTCGTAAAGAAGAAGAAGAGGAAGAAGAAGAAGAGGGAAACTACGAAGATCTTTCATGGTATATGAGGCAGCATACTGGATTCAAAA AGGTTGCTAAGTTGCTGCAAGTGCCTAAGGATGATAGTAAGGTTAGCTTTTTGCAGGCTGCCTTTGAGTTTACTTGCAGCAAGTTGCCATTCTAG
AA sequence Show only first row Show all	>Lus10002950 pacid=23164964 polypeptide=Lus10002950 locus=Lus10002950.g ID=Lus10002950.BGIv1.0 annot-version=v1.0 MVIENGFIKERDNKAAATKMVDPGKPPALTWQRKLKDEPVPPLPFSLAFKDIAHMLPIGVRLIRHTKAEAAEGRETIFDFLRTHHVTGDHGLPLGSIGTG SIGRSYKGEFQHFKLLPLVHEEKPVLANQFSAFVSRPNGKKSSSVLCSRKPEFPAKPGSGIESWDWNLAGDKSTYHALFPRAWTSYDGEPDPDLRIVSRQ MSPFIPHNYKESSFPVTVFTFTLYNTGKTSADVTLLFTWVNSLGGQSGFTGQHYNTKMKTKDGVHGVILNHKTAKGHPQLTFAMAAQETDDVRVSECPYF LVSGPSKSSGITGKDMWDEIKTHGTFDNLCCKNLPSVPGSSIGAAIAASVTVPSGSVKTVTFSLAWDNPEVRFSGKSYYRRYTKFYGSLGDAAAKLARDA ILEHADWEAQIEAWQNPILEDKRLPEWYPVTLLNELYYLNAGGTIWTDGSLPLQSLTSIRDRKFSLDGSILEMKHQNNYHATKNDTAVEILERMVSTYEQ MNDRTTSSSNPAFGTYLMNKGEENVGNFLYLEGSEYLMFNTYDVHFYSSFAILMLFPKLELNFQRDFAAAVMMHDPTKMQIMSDGRVVPKKMLGAVPHDM GLNDPWFEMNAYNLFSTARWKDLNPKFVLQIYRDVVATGDMGFARAVWPSVYMAMAYMEQFDKDEDGMIENEGFPDQTYDAWPVHGVSSYCGGLWVAALQ ATSALARVIGEEDSAKYFWMRYQEAKGVYEKLWNGSYFNYDSSGNPSIHADQLSGQWYARATGLSPIVDEEKVKSALEKIYNYNVMKYKRGTRGAVNGML PDGRVDTSGMQSKEIWPGVTYALAASMIQEQMVDIGFNTASGVYQAAWSESGLGYSFQVPEGWNTDEKYRSLCYMRPLAIWGMQWALTREKVINEGGVVV LDQPSRKEEEEEEEEEGNYEDLSWYMRQHTGFKKVAKLLQVPKDDSKVSFLQAAFEFTCSKLPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10002950 [exp]	0	1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	1.7	0.8864
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	2.0	0.8732
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	4.2	0.8436
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	6.0	0.8404
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10032476 [exp]	6.3	0.8382
AT2G28390			SAND family protein (.1)		Lus10000722 [exp]	11.7	0.7431
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	12.0	0.8083
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	13.5	0.7819
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10005419 [exp]	20.5	0.7717
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	21.5	0.7817

Compare expression of checked genes

Lus10002950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.