Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53330 79 / 1e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 75 / 6e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 74 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 73 / 2e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 72 / 3e-13 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 71 / 5e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 72 / 6e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52620 70 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02060 69 / 2e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 69 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003515 [exp] 709 / 0 AT3G62470 80 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000015 [exp] 308 / 4e-104 AT3G09060 67 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 86 / 2e-17 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 82 / 2e-16 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032787 [exp] 79 / 2e-15 AT5G18390 625 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003575 [exp] 74 / 8e-14 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 73 / 3e-13 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 71 / 1e-12 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 69 / 3e-12 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075900 [exp] 242 / 3e-74 AT1G05670 89 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.014G121400 [exp] 79 / 2e-15 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 73 / 2e-13 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 70 / 2e-12 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 69 / 3e-12 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G250700 [exp] 69 / 4e-12 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 69 / 4e-12 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 68 / 6e-12 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G123600 [exp] 68 / 6e-12 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G031600 [exp] 68 / 7e-12 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002951 pacid=23164963 polypeptide=Lus10002951 locus=Lus10002951.g ID=Lus10002951.BGIv1.0 annot-version=v1.0 ATGGGCCTCCTAATCCGATCTCAGAAAACCCTTATCAGATCACTCGCACAATCCCACTCTTCTCTTTCTTCCCGCCTCTCCCATTTCACCCTCCCGCCAC TTTCCCTCTCAATCCCACCTCCTCTCCCTAGGTCGAATCATGGCGGCGTTCTCAGCTCACTGTCAATTTTATCAACTTGCTTCCGATGTTACTCGTCGGT TTCTGCTGCTGCTGCTTCCAATATCCCCTCTACGGAAAACCCACCGAAGAAGAGAATGCCCTTTTTCTCGGAGATTATTCAGCTGATCAGCTCTGGGGAT CCTGGATTCGAATCAAAGCTGGATTCAATGCGATTAAGCACCTTAGATCTCAGATCTGTCAAGGATATTTTTCAAGCTCTCAGTAACTCAAAGGTATCCG CTTTCCGTTTCATTGATTGGATTGGAGTTCATCGCCCGGATTTCGTAGCAACTCCAATATGCGCACACCTGCTTATCGATAACTGCGGCAGATGTGATGA TTACGAAAAAATGAGCAGTCTTTTAGCTAGTTTGAATCAGAGGAACGTTTCTCTAAAGAAAGATGCATTCGGATTCTTAGTTATTATTAATAAGAATGGA GATGAACCACTAGATGAATCTGCTTTGATGGAAGCGGTAAAGAAGGTAGTTGGCATGCTGAGTGATGTAGGTGGGAGGGTTTATCTTACTGGTGTCCAAT CCTTGGTCGAATTGCTTGCGAATTCGGTCTCGTTCAAAATGGCAAAGTTCGTGATTGGTTTATCCGACAAGAGGGTGTCTTACCATAGCGTATTGATCAA GGAAATGTGCAAGAAGCACGAGTTTGAACAAGCGATGAAGGAAATCAACGAGATGAAGGGATTGTACGGGGATGCATGCAATCTCGATTGTCGAAGCATT TACAATTACATGATCAGCACGATGTTGAAGGCCGGTAAGGAAGATGCTTCCGTGGAAGTTCTGCATGAGATGACGAGGAAAGGGTTTCCTCCGGATGCGT TGACTTTCGAGATACTTATATGCAATTCCGTGGCGAAGAAGGAGTTTGGGACTGCGATTAAGTTCTTTTACTCGATGGTTGAGGCCGGAGTTGAGCCCAG GAGGTCGACTCACATTACGTTGTTGAAGATGTTCTTTGACTTGGGGCAGTACGAGGAAGCTTATAGCTATGCTGTTACTGTGAGCGAGAAGTTTAAGGGG TCCGGTGATCAGACCTACTGCATGCTTGCGGAACTGTATAGGAGGAGAGGTCATCTGTTGATGTCGAAGAACATTCTTTGTGCGATGATGAGTAAAGGTC TGGCACCGGATTCATTTGTTTACAGGATGGTTTTGAGGAACCTCAAGGGGTCTGAATTCGAAGAACATGCTGTGGAGTTGGAAAAGCAGCATCAAAAGGT TCGATTTGGCAACTTGGTGTAG
AA sequence Show only first row Show all	>Lus10002951 pacid=23164963 polypeptide=Lus10002951 locus=Lus10002951.g ID=Lus10002951.BGIv1.0 annot-version=v1.0 MGLLIRSQKTLIRSLAQSHSSLSSRLSHFTLPPLSLSIPPPLPRSNHGGVLSSLSILSTCFRCYSSVSAAAASNIPSTENPPKKRMPFFSEIIQLISSGD PGFESKLDSMRLSTLDLRSVKDIFQALSNSKVSAFRFIDWIGVHRPDFVATPICAHLLIDNCGRCDDYEKMSSLLASLNQRNVSLKKDAFGFLVIINKNG DEPLDESALMEAVKKVVGMLSDVGGRVYLTGVQSLVELLANSVSFKMAKFVIGLSDKRVSYHSVLIKEMCKKHEFEQAMKEINEMKGLYGDACNLDCRSI YNYMISTMLKAGKEDASVEVLHEMTRKGFPPDALTFEILICNSVAKKEFGTAIKFFYSMVEAGVEPRRSTHITLLKMFFDLGQYEEAYSYAVTVSEKFKG SGDQTYCMLAELYRRRGHLLMSKNILCAMMSKGLAPDSFVYRMVLRNLKGSEFEEHAVELEKQHQKVRFGNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10002951 [exp]	0	1
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	5.3	0.8881
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	8.5	0.8867
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	8.7	0.8847
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	15.3	0.8379
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10012971 [exp]	19.7	0.8214
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	20.4	0.8447
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	20.9	0.8489
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	21.8	0.8483
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	25.0	0.8488
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	27.8	0.8590

Compare expression of checked genes

Lus10002951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.