Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71690 283 / 2e-95 Protein of unknown function (DUF579) (.1) AT4G09990 277 / 3e-93 Protein of unknown function (DUF579) (.1) AT1G33800 269 / 6e-90 Protein of unknown function (DUF579) (.1) AT1G09610 266 / 6e-89 Protein of unknown function (DUF579) (.1) AT1G67330 224 / 2e-72 Protein of unknown function (DUF579) (.1) AT1G27930 205 / 7e-65 Protein of unknown function (DUF579) (.1) AT2G15440 155 / 4e-45 Protein of unknown function (DUF579) (.1) AT3G50220 150 / 2e-43 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 147 / 4e-42 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT4G24910 132 / 2e-36 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005829 [exp] 307 / 9e-105 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 306 / 2e-104 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 230 / 1e-74 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 229 / 2e-74 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 223 / 5e-72 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 221 / 6e-71 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 199 / 8e-63 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10003512 [exp] 161 / 1e-50 AT1G71690 71 / 3e-16 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 150 / 1e-43 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102200 [exp] 301 / 1e-102 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 298 / 2e-101 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 259 / 2e-86 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 256 / 6e-85 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 215 / 7e-69 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 212 / 1e-67 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 168 / 2e-50 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.015G096900 [exp] 168 / 3e-50 AT4G24910 248 / 6e-81 Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 159 / 1e-46 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 153 / 2e-44 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10002954 pacid=23164974 polypeptide=Lus10002954 locus=Lus10002954.g ID=Lus10002954.BGIv1.0 annot-version=v1.0 ATGGCTACCATCAAATTAGCTCAACAATCCGCCATTAACGCCAAACAACTCATCTTCCTCTGTTTCTTCTTCCTCTGCCTCATCACCCTCCTCCTCTGTT TCACCTCCCCTTCAACCACCACCAATCCACCTCCACAACAACCCCCCTTGAAAACCCCGCTTCCGCCGTCACTTGCCGCCGCAATAGTCCACTACGCCAC CACCAACACCACGCCACAACAAACCTTCAAAGAGATCTCCGTCACCCTCCGCGTCCTGTCCAAAAAATCCCCATGCAACTTCCTGGTCTTCGGCCTCGGC CATGACAGCCTGATGTGGTCGTCGCTGAACCACGGCGGTCGGACGGTCTTCCTTGAAGAAAACCCGTCATGGATTGACCACGTCCGCCAGACCACTCCTC CTCCGGCGAGTTTGGAAATGTACAAAGTCGATTACGACACGAAGCTCTACAAGGCTTCAAGACTGATGCAACACGCAATGGGGGATTTGGACTGTAAGGA ATTAGGTGCGGGGATTAGAGATTCGAAGTGCCGGCTGACGATGAAGGGACTTCCGGCGGTGGTTTATGATACGGAGTGGGATTTGATCATGATTGATGCT CCGACTGGGTATCACTACGAGGCTCCTGGGAGGATGACAGCGACATACACTGCAGGGCTTATGGCGAGGAGTAAATTAGGAGAAGGGAAGGAGACGGAGG TTTTCGTTCATGATGTTGATCGGACGGTGGAGGATACTTATTCGATGGTGTTTTTGTGTCACAGGTTTTTGACGGAGGAGGAAGGACGGCTGCGGCGGTT TACTGTTCCTGGTCATCGCCCCGGCGAGGCTTTTTGTCCTGGAATTTAA
AA sequence Show only first row Show all	>Lus10002954 pacid=23164974 polypeptide=Lus10002954 locus=Lus10002954.g ID=Lus10002954.BGIv1.0 annot-version=v1.0 MATIKLAQQSAINAKQLIFLCFFFLCLITLLLCFTSPSTTTNPPPQQPPLKTPLPPSLAAAIVHYATTNTTPQQTFKEISVTLRVLSKKSPCNFLVFGLG HDSLMWSSLNHGGRTVFLEENPSWIDHVRQTTPPPASLEMYKVDYDTKLYKASRLMQHAMGDLDCKELGAGIRDSKCRLTMKGLPAVVYDTEWDLIMIDA PTGYHYEAPGRMTATYTAGLMARSKLGEGKETEVFVHDVDRTVEDTYSMVFLCHRFLTEEEGRLRRFTVPGHRPGEAFCPGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09990			Protein of unknown function (D...		Lus10002954 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027798 [exp]	4.9	0.7751
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	35.6	0.7126
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	51.9	0.7393
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	55.7	0.7615
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	74.8	0.7180
					Lus10010742 [exp]	74.8	0.7504
AT3G14880			unknown protein		Lus10013746 [exp]	85.7	0.7020
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006233 [exp]	99.0	0.7194
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10025453 [exp]	99.7	0.7237
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	102.8	0.7478

Compare expression of checked genes

Lus10002954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.