Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63020 1303 / 0 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 301 / 1e-82 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT4G35800 199 / 2e-51 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT5G60040 170 / 2e-42 NRPC1 nuclear RNA polymerase C1 (.1.2) AT3G57660 108 / 3e-23 NRPA1 nuclear RNA polymerase A1 (.1) ATCG00180 67 / 5e-11 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) AT3G46630 54 / 1e-07 Protein of unknown function (DUF3223) (.1) AT1G45230 54 / 2e-07 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT5G62440 49 / 1e-05 Protein of unknown function (DUF3223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006339 [exp] 2872 / 0 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002748 [exp] 318 / 4e-88 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10041856 [exp] 197 / 2e-50 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10016332 [exp] 179 / 5e-45 AT2G40030 1086 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10015971 [exp] 158 / 2e-38 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 134 / 4e-31 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10028403 [exp] 120 / 5e-27 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10040493 [exp] 104 / 4e-22 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 103 / 7e-22 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111300 [exp] 1667 / 0 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G027232 [exp] 309 / 2e-85 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.003G196900 [exp] 292 / 6e-80 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.005G107600 [exp] 198 / 8e-51 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.001G341900 [exp] 173 / 3e-43 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.006G055300 [exp] 106 / 1e-22 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.014G023400 [exp] 61 / 7e-10 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.013G140850 [exp] 63 / 1e-09 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028000 [exp] 59 / 6e-09 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.014G023200 [exp] 55 / 8e-08 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223) PF05000 [flax] [poplar] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10002955 pacid=23142127 polypeptide=Lus10002955 locus=Lus10002955.g ID=Lus10002955.BGIv1.0 annot-version=v1.0 ATGGAGGCTGATACGTTTGAGGTCCAACCACCACCGCCATCCGGTTTCTTAACTGGCATAACCTTCGGTATCGCAACCAAAGACGAAAAGGAAAAGTTTG CAGCTTTAGAGATTACAACAAATAGTGAAGTCACTGACACAAAGTTAGGATTCCCAAACGCTAGTTCTCAATGCTCCACTTGTGGTGCTAAAGATTTGAA ACATTGTGAAGGTCACTTTGGCGTCATCAAGTTTCCTATGACAATTCTCAATCCCCATTTCATGTCTGAAGTCGCCCGCATTCTGAACAATATATGCCCG AGTTGTAAATCTGTGCGGAATCTTTTGCCTAAGAAAAAGGATCAGAGGCCTAAAGAAAACCTGTCTAATGGCTGCAAATACTGTGCGAAGCAAGGAAAGA CATTAGGGTGGTATCCAAGAATGAAGTTCACGGTTTTTACTGGACAATACTTTCGGAAAACGACAATCGTTGCCGGGATTGGCAAACAACTACCGACACG GAGAGGAGTCAGAAAACTGGCTCCTGACTTTTGGGACATTATTCCAAAGGATGAAGAATTAGATGAAAACGCTATCACGCCAACTAAAAGGCTTTTGACG CATGGGCAGATTTGCCATTTGTTAAATGGTGTTGATGATAGTTTCATAGAGAGGTTCTGTTTGAACAAAGAGTGTCTATTCCTCAATAGCTTCTCAGTAA CACCAAATTCTCAGCGTGTTACGGAAATGATGAGTTCATATTCTAGTTCACGAAGATTGGCCTTTGATGGTCGCACTCGTGCATACAAGAAGATGGTTGA TTTCAGAGGGAAAACACATGAATTATGTTACCATGTCCTCGAGGCTCTCGCAGCTTCCAAGATAAACACTGAACGGATAGCCCCAAACGATCCAATTGCC CTTCTTCAAAAGAGGAATGATGATGTGTCTACAAACTCTTCCGGATTGAGATGGGTCAAGGATGTTGTTCTGGCTAAGAGGAATGATCATTGTTTCCGCA TGGTGGTCGTCGGAGACCCTAGTCTACAGCTCAGTGAAATTGGGATCCCCCGCGCAGTTGCAGAAAGTATGAAAATTTCGGAACATCTGACAACATACAA TGCAGACAAGCTCGTAAGTTGCGTTGAAGAGCTCCTTCTCGAGAAGGGTATGATTCATGTACGCAGAGGAAGCGACCTTGTTCGTATTTCTCGTACGAAG GACCTCAAAATCGGGGACATGATATATAGGCGACTGAAGGATGGAGATACCGTCCTAGTCAACAGGCCTCCGTCCATCCATAAACACTCCCTAATTGCAC TCTCTGTGAAGATCCTTCCGGTTACTTCATCTCTAGCGATAAATCCGCTCTGCTGCTCTCCGTTTCGGGGCGATTTCGACGGCGACTGCATGCATGGCTA TATTCCTCAATGTGTTAACAGTAGAACCGAACTTAAGGAGCTCGTTTCATTGGATAAGCAGCTGACCGATGTACAGAGTGGCCAGAATCTTCTTGCTCTC AGCCAAGATAGTTTGACTGCTGCACATTTAGTATTAGAGAATGGGATCTTTCTCAACAAATATCAGATGCAACAGTTGCAGATGTTCTGCCCTAAGGAGT TGCTAGCCCCGGCGATGATGTCATCTTTGACCGGTGGGGTATGGACTGGAAAACAGTTGTTTAGCATGCTCTTGCCCCAAGGGTTTGACTTTGATTTTCC ATCAGATAATGTCTCGATACGTGATGGTGAGCTAATGCATTGTGATGGATCTTTCTGGTTGCGTCAGACAGAAGGAAACCTATTTCAAAGCCTTTCCCAG TGTTTCAGCGGTGATGTTCTTGATGTGCTGTATGCTACTCAGAGAGTTCTGGGCGAGTGGCTATCGACGAGAGGGTTTAGTGTTTCTCTCTCCGACTTCT ACCTCTGTCCCGACTCCAACTCACACAAAAGCATGCTGGATGAGATCTCGTGCGGGTTGCAAGAAGCAGAAGAAGCTGCTGACGCAAGGCAGCTAATGGT GGATTCTCGTCAGGATTTCCTTGCTACAGGCAGTGAAGAAGTTAGTGTCGTGTTCGAAGCTGATAGCTTTTTTCTTGAAAGGCAGAGATCTGCTGCACTG AGTCAAGGATCGGTTGATGCTTTCAAGCAAGTGTTCCGAGATATTCAAACCCTGGCCTTCAGATATGCGTCTAAGGAAAATTCATTGCTGACCATGTTTA AGGCCGGAAGCAAAGGAAATCTGCTGAAACTGGTCCAGCATAGCATGTCTCTCGGTCTGCAACATTCCCTTGTCCCATTGCCATTCAAGATGCCTCGCCA GCTCTCGTGCGAATCGTGGGATAAACAGAAAGCCGATGATGCTACTGACTGTGCCAAGCGGTTTGTTCCATCTGCAATTGTCAAAAGCTGCTACCTAACC GGACTGAATCCCTTGGAAGCTTTCGCTCACTCAGTCACAAACAGGGATAGCTCGTTCAGTGACAACGCTGAGCTTCCGGGAACTTTGTCCCGGAGACTTA TGTTCTTCATGCGTGATATCTGCACGGCATATGATGGGACAGTAAGGAATGCATATGGGAATCAGCTTGTACAGTTTTCATACAACACTGATGAGAACAC AAGCGATCGCGGTCCAGATGGTGGCCACCCTATTGGTGCACTGGCTGCTTCTTCGATCTCGGAAGCTGCATATAGTGCTCTGGACCAGCCGATTAGTCTT CTGGAAAAATCGCCCCTGCTAAATCTCAAGAATGTACTGGAATGCGGTGCCAAAAAGAGTAAATCTCCACGAACTGCATCACTGTTTCTCTCGAAGAAGC TCGGAAGAAAAAGATACGGTTTTGAGTATGGCGCGCTGGATGTTCGGACCCATTTGCAGAAAGTTCTGCTTTCTGATACAGTTTCTATTGCCAGGATAAT ACATCCTCGGAAAGCTGATTGCGTGCCTCAACTGAGCCCTTGGGTTATACATTTCCATTTATTGAAGGAAATTGTGAAGAAGAAAGGCCTGCAGCCTGCA GTAATAGTTGACGCTCTGGACAAGCAGTGCTCTGTGAATCCCAAATTTCCGAAAATTGAGTTCAAATACATTCGGCGATGTCGTGATGGTGACAATTGGA ACGAACGCCAGGAAACATTTTGCATAACGGCCACAGTGATTGAAAGTCCCAAAAGATCTTCCACGGAGTTGGAAACTATTCGAGATTTCTTGATTCCCTT TCTTCTTGGAACACCTATTAGAGGATTCTCGGATATCGACAAGGTGGCTATTCTTTGGAGTGATAAGCCAAAGGTAACGTTTTCCGGCAAACGAAAATCT GGTGAGCTCTACTTGCGAGTAACGATGTCTGGAATGTCAGACACATCGAGACTCTGGGGCCAGCTTCTGGACAACTGTCTCCCTATAATGGATATGATTG ACTGGACGCGAAGCCATCCGGATAACATCAGGGATTTATCTTCTGCTTATGGCATTGATTCTGCTTGGAATGTTTTTGTCAGTAGCCTGGAGTCTGCAAT TGGTGATGTCGGCAAAACTGTTCTTCCTCAGTATTTGCTTCTGGCAGCTGACACTATGTCCATAACTGGAGAATTTGTTGGCTTGAATGGAAAAGGTTTG AAGCTTCAGAGAGAGCATGCGTCTGTGACATCCCCATTTGTGCAGGGTGCCTTTAGTAATCCCGGGGATAACTTTATCCGTGCTGCAAAGGCTGGTGTCA CTGATCAACTCATGGGTTCGGTGGATAAACTGGCATGGGGGAGGATGGCTGCCATTGGAACTGGCACTTTTGACATCATTATGACTCTGAAGGATCATGT ACTGCCCAAGCATAAAAATGGGTACGAGTTTCTGGCTGAACACTCAACTTCTCAAACTCTCAGCACAACATTTGAGATACCAGACTCGTGGAGCAAAAGA TTCGAGAAATGCCGAACAGAAATGCCATTCAAACTTGATGGCTATGCTAACCTATCCAAAAAGGCAAGTGTTGCAGCATCGCTTGGAACTCATCTATCTT ACAACGACATTCTGAAGCTCGACCAAGAACTGCGCAGAATCTTGAATACCTCTCCTGTGGATGAGGAACTCAGTGATCGTGGCAAAGAGAAATTGATGAA AGCATTATACTTCCACCCTCGTAAAGACGAGAAGATTGGAAACGGAGCTCAACACTTCAAGGTTATAAACCACCCGATACATGAAGGCTCGCGCTGCTTC GCAGTGGTTAGAGCCAATGGTACAATGGAGGACTTCTCGTATCATAAGTGCATCATGGCTGCACTTGACATAATCGCCCCCGGTAAGACCTCATTGTACC AGAAGAGGTATCTGCAGAGGCTCAATGGTAAAGATCAGTAA
AA sequence Show only first row Show all	>Lus10002955 pacid=23142127 polypeptide=Lus10002955 locus=Lus10002955.g ID=Lus10002955.BGIv1.0 annot-version=v1.0 MEADTFEVQPPPPSGFLTGITFGIATKDEKEKFAALEITTNSEVTDTKLGFPNASSQCSTCGAKDLKHCEGHFGVIKFPMTILNPHFMSEVARILNNICP SCKSVRNLLPKKKDQRPKENLSNGCKYCAKQGKTLGWYPRMKFTVFTGQYFRKTTIVAGIGKQLPTRRGVRKLAPDFWDIIPKDEELDENAITPTKRLLT HGQICHLLNGVDDSFIERFCLNKECLFLNSFSVTPNSQRVTEMMSSYSSSRRLAFDGRTRAYKKMVDFRGKTHELCYHVLEALAASKINTERIAPNDPIA LLQKRNDDVSTNSSGLRWVKDVVLAKRNDHCFRMVVVGDPSLQLSEIGIPRAVAESMKISEHLTTYNADKLVSCVEELLLEKGMIHVRRGSDLVRISRTK DLKIGDMIYRRLKDGDTVLVNRPPSIHKHSLIALSVKILPVTSSLAINPLCCSPFRGDFDGDCMHGYIPQCVNSRTELKELVSLDKQLTDVQSGQNLLAL SQDSLTAAHLVLENGIFLNKYQMQQLQMFCPKELLAPAMMSSLTGGVWTGKQLFSMLLPQGFDFDFPSDNVSIRDGELMHCDGSFWLRQTEGNLFQSLSQ CFSGDVLDVLYATQRVLGEWLSTRGFSVSLSDFYLCPDSNSHKSMLDEISCGLQEAEEAADARQLMVDSRQDFLATGSEEVSVVFEADSFFLERQRSAAL SQGSVDAFKQVFRDIQTLAFRYASKENSLLTMFKAGSKGNLLKLVQHSMSLGLQHSLVPLPFKMPRQLSCESWDKQKADDATDCAKRFVPSAIVKSCYLT GLNPLEAFAHSVTNRDSSFSDNAELPGTLSRRLMFFMRDICTAYDGTVRNAYGNQLVQFSYNTDENTSDRGPDGGHPIGALAASSISEAAYSALDQPISL LEKSPLLNLKNVLECGAKKSKSPRTASLFLSKKLGRKRYGFEYGALDVRTHLQKVLLSDTVSIARIIHPRKADCVPQLSPWVIHFHLLKEIVKKKGLQPA VIVDALDKQCSVNPKFPKIEFKYIRRCRDGDNWNERQETFCITATVIESPKRSSTELETIRDFLIPFLLGTPIRGFSDIDKVAILWSDKPKVTFSGKRKS GELYLRVTMSGMSDTSRLWGQLLDNCLPIMDMIDWTRSHPDNIRDLSSAYGIDSAWNVFVSSLESAIGDVGKTVLPQYLLLAADTMSITGEFVGLNGKGL KLQREHASVTSPFVQGAFSNPGDNFIRAAKAGVTDQLMGSVDKLAWGRMAAIGTGTFDIIMTLKDHVLPKHKNGYEFLAEHSTSQTLSTTFEIPDSWSKR FEKCRTEMPFKLDGYANLSKKASVAASLGTHLSYNDILKLDQELRRILNTSPVDEELSDRGKEKLMKALYFHPRKDEKIGNGAQHFKVINHPIHEGSRCF AVVRANGTMEDFSYHKCIMAALDIIAPGKTSLYQKRYLQRLNGKDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10002955 [exp]	0	1
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	2.4	0.9112
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	4.4	0.9282
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	7.9	0.8970
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	12.3	0.9053
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	16.3	0.9068
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	18.4	0.9041
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	18.7	0.8932
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	22.8	0.8854
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	26.1	0.8740
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	26.4	0.8884

Compare expression of checked genes

Lus10002955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.