Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22990 771 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT4G11810 760 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT1G63010 715 / 0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT5G13740 44 / 0.0002 ZIF1 zinc induced facilitator 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006340 [exp] 923 / 0 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10009314 [exp] 640 / 0 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 632 / 0 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10035862 [exp] 45 / 7e-05 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120600 [exp] 821 / 0 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.001G111400 [exp] 808 / 0 AT4G22990 1087 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Potri.014G078000 [exp] 703 / 0 AT4G22990 978 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10002956 pacid=23142136 polypeptide=Lus10002956 locus=Lus10002956.g ID=Lus10002956.BGIv1.0 annot-version=v1.0 ATGAAAGCAGCTGTCGACCGGTTAAGCCACTCAACGAACTTCTTGAACTTTATGGCACAACATGCACTTATCATGCAAGAAGAGCTCCCAACCCCCACGG AGGAAAGCATTGATGATAATAGATACCATTTTATGTCTCTTCTCTTGAATTTGGTTAACACCTTCCTTTACATGGTCAACACCTATATTATAGTACCCAC AGCAGATGACTACTCCATGAGCCTCGGAGCACCAGCAACAGTTTGTGGTGTTGTCATTGGATCAATGGCTGTTGCACAAGTGTTTTCTTCAGTTTATTTC AGTGCATGGTCTAATAGATCATACTTCAAGCCTCTCGTGTTCAGCAGTATTGTTCTTCTCATCGGGAATGTCATGTATGCAATGGCTTATGATTCCAAGT CAATAGCCATACTTTTATTAGGCCGTCTATTCTGTGGGTTTGGTTCTGCTCGAGCTGTCAACCGACGCTATATCAGTGATTGTGTGCCTCTTAAGTTCCG CATGCAAGCTTCCGCAGCTTTTGTTAGTGCCAGTGCTCTTGGGATGGCTTGTGGCCCTGCTCTTGCTGGCTTTCTTCAAACTGAATTTAAAATTTACAAT ATCACATTCAACCAGAACACTCTGCCTGGCTGGGTTATGGCTGTGGGTTGGTTCATTTATCTGATATGGTTGTCGTTCTCGTTTAGAGAACCTGCTCAAG AAGCAGAAGAGACGAATGCATCATCACAATCTAGTGAAGGACCAGCACGAAACGATGCTCTTGAGAAAGGCCTTAAACAGCGATTGCTACCCAACACAGA AGCCAGTCAAGAAGATGAAGATTATGGGAGCGATGAAGAAGCTGAGGAATCTAGACGACCAGCTAATTCACTTCGCTCTGCTTATAAGCTACTTACTCCT TCTGTAAAGGTTCAACTGTTAATATATTTCATGCTCAAGTACGCCATGGAGATTCTGCTATCGGAGTCCAGTGTCGTCACCACGTACTACTTTGGCTGGT CTACTAGTTCAGTTGCTATATTTCTTGCCTGTTTAGGCATCACCGTCCTACCAGTGAACATCCTAGTTGGAAGCTACATAAGCAACATGTTTGAAGATAG GCAAATCCTATTAGCATCAGAAATCATGGTCTGTGTAGGAATACTCCTAAGCTTCCACTTATTAGTTCCATACACTGTGCCCCAATACGTCTGCTCAGGG CTCATCATGTTCGTCTCTGCCGAAGTACTCGAAGGAGTCAACTTATCGTTGCTCTCGCGAGTGATGTCATCAAGGCTCTCGAAAGGGACGTACAACGGTG GGCTACTCTCGACCGAGGCAGGCACATTAGCTCGTGTCGTAGCGGATGGCACCATTACATTGGCAGGGTACTTGGGGCAGAGCATGCTGTTGAATGTAAC GCTTCTCCCTTCTCTTGTCATTTGCATAACCTCCATCCTCGCCACCTGCTTCACCTACAACTCACTCTATTGA
AA sequence Show only first row Show all	>Lus10002956 pacid=23142136 polypeptide=Lus10002956 locus=Lus10002956.g ID=Lus10002956.BGIv1.0 annot-version=v1.0 MKAAVDRLSHSTNFLNFMAQHALIMQEELPTPTEESIDDNRYHFMSLLLNLVNTFLYMVNTYIIVPTADDYSMSLGAPATVCGVVIGSMAVAQVFSSVYF SAWSNRSYFKPLVFSSIVLLIGNVMYAMAYDSKSIAILLLGRLFCGFGSARAVNRRYISDCVPLKFRMQASAAFVSASALGMACGPALAGFLQTEFKIYN ITFNQNTLPGWVMAVGWFIYLIWLSFSFREPAQEAEETNASSQSSEGPARNDALEKGLKQRLLPNTEASQEDEDYGSDEEAEESRRPANSLRSAYKLLTP SVKVQLLIYFMLKYAMEILLSESSVVTTYYFGWSTSSVAIFLACLGITVLPVNILVGSYISNMFEDRQILLASEIMVCVGILLSFHLLVPYTVPQYVCSG LIMFVSAEVLEGVNLSLLSRVMSSRLSKGTYNGGLLSTEAGTLARVVADGTITLAGYLGQSMLLNVTLLPSLVICITSILATCFTYNSLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22990			Major Facilitator Superfamily ...		Lus10002956 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	2.2	0.8659
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	3.9	0.8316
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	15.0	0.8348
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042295 [exp]	20.2	0.7702
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	22.8	0.8087
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	23.2	0.8125
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	27.0	0.8088
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	30.6	0.7042
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	34.0	0.7791
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10036069 [exp]	35.1	0.7812

Compare expression of checked genes

Lus10002956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.