Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12570 683 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 630 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 619 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 572 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 556 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 412 / 5e-138 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 358 / 2e-117 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 356 / 8e-117 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024487 [exp] 866 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 852 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 600 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 595 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 591 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 587 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 586 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 579 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 578 / 0 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111500 [exp] 821 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 606 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 598 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 479 / 2e-165 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 434 / 2e-146 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 377 / 1e-124 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 376 / 8e-124 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 357 / 2e-116 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 83 / 1e-18 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10002957 pacid=23142141 polypeptide=Lus10002957 locus=Lus10002957.g ID=Lus10002957.BGIv1.0 annot-version=v1.0 ATGGGTAGTTCTCAAGTTGGCTGCCCTTCCCTTGCTTACTCCCTTGCCATTTCCCTCCTCTTCTTCTTCCATGGCTGCCGCCCATCTGCCTTACAGCAAG ATCACAACTACACATTCGTCCACGACGCAACGTTGGCCCCGGCGACATCGTACTACGACTACATCATCGTGGGAGGTGGAACTGCCGGCTGTTCGTTTGC GGTCCACTCGTCACAGAAACACACCGCTTTGTGCTCGACAACCGTGTTGGTCCTGGAGCGCGGCGGCTCACCTTATGGAGACCCGAACATCACCTACTTA GCCAACTTCGGAGCCCCGCTAGCCGACGCCTCCCCTTCTTCCCCTTCACAGAGATTCATCTCCGAGGATGGCGTAATCAACTCTCGCGCTCGAGTCCTCG GCGGCGGTTCCTGCCTCAACGCTGGCTTCTACACCCGCGCCGGCGCCGATTACATCAGGGATGTGGGATGGAATGCTGAGCTAGCGGAGTCGTCGTACGA GTGGGTGGAGAAGGTGGTGGCGTTCCAGCCGCCGATGGGGAAGTGGCAATCGGCAGTCCGAGATGGTCTTTTAGAGGCCGGAATTGTCCCTAACAATGGC TTCACGTACAACCACATTTATGGTACTAAAGTCGGCGGTTCAATATTCGACACCGATGGCCACCGTCATACCGCCGCCGATTTGCTAGACTATGCCAATC CTGATCGCCTCACTGTCCTTCTTAAGGCCACTGCACATAAAATCATGTTCCAAACTAAAGGAAGAACAAGGCCCAGGGCCCATGGAGTGTTGTTCAGGGA CTCGGCTGGGGTGAAACACTACGCCTATTTGAACAGTGGAGACCACAACGAAATCATCATATCAGCTGGGTCGCTAGGAAGCCCACAACTTTTGATGCTC AGTGGAGTAGGCCCATCCGACCAACTCAAGGCCCACAACATTACTCTTGTATCGGAAAATCGCATGGTCGGTCAGTCGATGTTAGATAATCCGATGAACG CCATCTTTGTCCCCTCTCCGGTGCCCGTGGAGGTTTCTCTCATCGAGGTCGTCGGTATCACCCACTTCGGGAGCTACATTGAGGCCGCCAGTGGTGCCAA TTTCGGACGATTCCCGACCAACGATTACGGTTTCTTGTCTCCAAAGATTGGTCAGCTATCAACACTACCACCAAAACAAAGGACACCAGAGGCCTTAGAA AGGGCAATATACAACATGAGCAAGCTAGACAGAGCAGCCTTCAGGGGAGGCTTCATACTCGAAAAAATCATGGGACCTCTATCAACCGGTCACTTGGAGC TAACCTCGAGGAACCCTAACGTAAACCCGTCGGTCACATTCAACTACTTCAAGCACCCCGACGACCTGAACATGTGCGTCCAAGGGATGTCGACCATAGA GAGAGTGATCAACTCGAAGCCCTTCTCGAAGTTTCGGTACAACAACATGTCGGTGCCGCACTTGCTGAACATGACAGCCAGCGCGCCGGTGAACATGCTC CCGAGACATAGGAACACGTCGGCTTCGTTGGAACAGTTCTGTAAGGACACCGTGATGACCATATGGCATTACCACGGCGGGTGCCAGATCGGGGAGGTGG TCGGTCCGGATTACAAGGTGCTCGGTGTTGATGCATTGAGGGTTATTGATGGTTCAACTTTTAATGCCTCCCCTGGGACTAATCCTCAAGCTACTGTCAT GATGCTTGGGAGGTACATGGGGGTTACAATGTTGGCTCAGAGGTTTGCAAGTGGAGAAGAAGGCTCAAAATAA
AA sequence Show only first row Show all	>Lus10002957 pacid=23142141 polypeptide=Lus10002957 locus=Lus10002957.g ID=Lus10002957.BGIv1.0 annot-version=v1.0 MGSSQVGCPSLAYSLAISLLFFFHGCRPSALQQDHNYTFVHDATLAPATSYYDYIIVGGGTAGCSFAVHSSQKHTALCSTTVLVLERGGSPYGDPNITYL ANFGAPLADASPSSPSQRFISEDGVINSRARVLGGGSCLNAGFYTRAGADYIRDVGWNAELAESSYEWVEKVVAFQPPMGKWQSAVRDGLLEAGIVPNNG FTYNHIYGTKVGGSIFDTDGHRHTAADLLDYANPDRLTVLLKATAHKIMFQTKGRTRPRAHGVLFRDSAGVKHYAYLNSGDHNEIIISAGSLGSPQLLML SGVGPSDQLKAHNITLVSENRMVGQSMLDNPMNAIFVPSPVPVEVSLIEVVGITHFGSYIEAASGANFGRFPTNDYGFLSPKIGQLSTLPPKQRTPEALE RAIYNMSKLDRAAFRGGFILEKIMGPLSTGHLELTSRNPNVNPSVTFNYFKHPDDLNMCVQGMSTIERVINSKPFSKFRYNNMSVPHLLNMTASAPVNML PRHRNTSASLEQFCKDTVMTIWHYHGGCQIGEVVGPDYKVLGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGVTMLAQRFASGEEGSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10002957 [exp]	0	1
					Lus10011496 [exp]	1.4	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	2.4	1.0000
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	3.0	1.0000
					Lus10034512 [exp]	3.3	1.0000
					Lus10008049 [exp]	3.5	1.0000
					Lus10024550 [exp]	3.5	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10036313 [exp]	3.9	1.0000
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	4.0	1.0000
					Lus10011759 [exp]	4.9	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	5.2	1.0000

Compare expression of checked genes

Lus10002957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.