Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 352 / 6e-113 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 335 / 7e-107 unknown protein AT5G66950 219 / 7e-61 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 218 / 2e-60 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 218 / 3e-60 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G20680 114 / 2e-27 Domain of unknown function (DUF1995) (.1) AT1G16540 67 / 4e-11 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006342 [exp] 811 / 0 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 243 / 2e-71 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10038892 [exp] 241 / 1e-70 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 219 / 8e-61 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 219 / 1e-60 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 218 / 1e-60 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 219 / 2e-60 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006345 [exp] 145 / 2e-41 AT3G20680 120 / 2e-34 Domain of unknown function (DUF1995) (.1) Lus10022447 [exp] 94 / 2e-20 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111600 [exp] 299 / 6e-92 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 286 / 3e-87 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 279 / 2e-84 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 226 / 4e-63 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 221 / 2e-61 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.011G132500 [exp] 113 / 3e-27 AT3G20680 313 / 8e-106 Domain of unknown function (DUF1995) (.1) Potri.003G172100 [exp] 101 / 6e-23 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 96 / 4e-21 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 94 / 1e-20 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G056400 [exp] 60 / 3e-10 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [flax] [poplar] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Lus10002958 pacid=23142130 polypeptide=Lus10002958 locus=Lus10002958.g ID=Lus10002958.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCAGGGGACTCTGCTACAACCTGCCATTGTGGGATACGCCGAATCTCTTGTCGTCGATCGTCGAATTTCATAACCAACTACGATCCTTCTC CGGCAGCCACTGCATTCCGAAGTGAGTTTGAAGCTTCGATGGCGAACTACCTCGAGACGAAGGAGGCGGATAGAATCAGAGCAGAGGAATATTCCCATCT CTATGTTTCGGATCACGTCTGTCTAGATTACGTCGGAAACGGTCTATTTTCCAATCGCCGGGAGAAGACATTTCCGCCGTCAGTAGCGTCAACGTCGACT GCGGAGTCTACGGAGTCATCGAAGAATCTGTTCTTCTTCGAACTCTCCCATAAATCGGTAATCAGCTTGAAATCGGAAATACAAAACGGGATTCCGGAAC CGGAATTCGGAACCAGATTGAAGAACAGAGTCTTGTCGTTTATGAACATTTCCGACGAGGAATACGGCGTCGTTTACACCGCAAACGAATCCTTTGCTTT CAAGCTCCTTGCCGATTGCTACCCGTTCGAAACGAACCGGAATCTATTAACGGTCTACGACCACGAAAATGACGCCGTGGAAGCGATGACGAAAGCCGCT CAAAAGAAAGGAGCCAGAGTTTCGTCGGCGCAGTTCACCTGGCCGGAGCTAGGAGTCAAGACAGAGAAGCTACAGAGGAAGATAACTCGTAATAAGAAGA GGAAGAAAAAAGGAGGGCTTTTTGTTTTCCCGGCGCAATCGAGAGTCACCGGAGCTAGATACTCGTACCTATGGATGAATTCTGCTCGGGAAAACGGCTG GTACGTCCTGCTCGACGCATCGGCATTAGTCCAGAAAGAAATGGAGACTCTGGGTCTATCCCTATTCGAGCCGGATTTCATAATCTGCTCCTTCTACAAA GTGTTCGGCGAGAACCCATCCGGTTTCGCGTGTTTGATTGTGAAAAAATTAACCGCCGCAGATTCAATTTCATCTAGCTCCGATCATAAGCCCTCGTTGA TAGTGGAATTAAATTCAAGCTTGAGCCCGAATTTCAAATTCCGCGGATTGGATCACGCAGACCATCTGGGACTAATCGTGATCAGCTACAGGCTCCGTCT GTTAACGAATTGGCTACTGAATTCCCTGCTCCAGCTCTGGCACCCGAGTTCTTCATCCGCCGGAGCTAATAATAACGTTCCCTTGGTCAGGGTGTACGGG CCGGGGCTGGAATTCGACAGGGGGACGGCGGTTGGGTTCAATGTGTTCGATTGGAGAGGTGAGATGGTCGATCCTGGAATGGTACAGAAGCTCGCCGGAA GGAGCGGGATTTCCGTAGGGTACGGGTATTTGAAGAACGTGGTGACGGCGGTAACGGAGGAGGAGGACGGTGGTGGAGGGGCGAGGAGGATGGTGACGGC GGCGATTGGGTTGGTGACGGATTTCGAAGACGTGTACAGGGTATGGGGGTTTGTGGCGAGGTTTTTGGATGCTGATTTTGTAGAGAAGGAGAGGTGGAGA TACACTACTCTTAATCAGAACGTCGTTGAAAGATTCTTTCGTTCTTTTTCTTCTTTTCTTCGTCTCATTTTGACCTTCTTGCCCATCAAAGAAGCTGCCA GAACAAGCATCCTGTCAACACAATGGAGGCATCGTTGGAGAAGTATCCCTCACCTTGTATTGGACAGTAATTTTGCTACTGTCAGTCCTTTCCTTTCTAT GGCTAGTTCTGATTCTGATGATTTCGATTCTTATTCTCGTTCTCGTTCTGAATTGGAAGAGACCAACAAGGTAACGCTGAGAGTTTTTGAAGCTCTGATC GGTCATGAAGGGTCCTCCATTAACAAGGTTCAAGGGGTTCTGAGCAAGAGGAAAGGTGTGATCTTTAAGTCTGGGGAGAGATCATGGAATGTGCTTGTTG AAGAGGGGAACGGTGAGATGATGGTGATTTCGCAGTTTAAAGGGAGGCCGTCGATCGATGAAGTTGAGACTGTTCTGTATAATTTGATGGCCATCAACTC TCCTATTCCGAAATCTGCCAGGTTTATTTCCGATTTGGTCTCCAATGTTACTGGAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10002958 pacid=23142130 polypeptide=Lus10002958 locus=Lus10002958.g ID=Lus10002958.BGIv1.0 annot-version=v1.0 MGKAGDSATTCHCGIRRISCRRSSNFITNYDPSPAATAFRSEFEASMANYLETKEADRIRAEEYSHLYVSDHVCLDYVGNGLFSNRREKTFPPSVASTST AESTESSKNLFFFELSHKSVISLKSEIQNGIPEPEFGTRLKNRVLSFMNISDEEYGVVYTANESFAFKLLADCYPFETNRNLLTVYDHENDAVEAMTKAA QKKGARVSSAQFTWPELGVKTEKLQRKITRNKKRKKKGGLFVFPAQSRVTGARYSYLWMNSARENGWYVLLDASALVQKEMETLGLSLFEPDFIICSFYK VFGENPSGFACLIVKKLTAADSISSSSDHKPSLIVELNSSLSPNFKFRGLDHADHLGLIVISYRLRLLTNWLLNSLLQLWHPSSSSAGANNNVPLVRVYG PGLEFDRGTAVGFNVFDWRGEMVDPGMVQKLAGRSGISVGYGYLKNVVTAVTEEEDGGGGARRMVTAAIGLVTDFEDVYRVWGFVARFLDADFVEKERWR YTTLNQNVVERFFRSFSSFLRLILTFLPIKEAARTSILSTQWRHRWRSIPHLVLDSNFATVSPFLSMASSDSDDFDSYSRSRSELEETNKVTLRVFEALI GHEGSSINKVQGVLSKRKGVIFKSGERSWNVLVEEGNGEMMVISQFKGRPSIDEVETVLYNLMAINSPIPKSARFISDLVSNVTGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10002958 [exp]	0	1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10006817 [exp]	8.4	0.5568
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10005803 [exp]	11.3	0.6038
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	13.8	0.5921
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	30.4	0.5534
AT1G67785			unknown protein		Lus10018082 [exp]	50.3	0.5249
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015182 [exp]	52.5	0.5202
AT3G62370			heme binding (.1)		Lus10011771 [exp]	56.0	0.5215
AT5G06430			Thioredoxin superfamily protei...		Lus10021764 [exp]	59.9	0.5347
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	62.0	0.5049
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	77.3	0.5137

Compare expression of checked genes

Lus10002958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.