Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 104 / 3e-25 F-box/RNI-like superfamily protein (.1) AT1G80960 59 / 1e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT3G58860 59 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G02930 57 / 4e-09 F-box/RNI-like superfamily protein (.1) AT4G03220 56 / 2e-08 Protein with RNI-like/FBD-like domains (.1) AT1G49610 53 / 9e-08 F-box family protein (.1) AT3G49030 53 / 1e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G67390 53 / 1e-07 F-box family protein (.1) AT2G04230 52 / 2e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G44950 52 / 2e-07 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006346 [exp] 456 / 4e-161 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 248 / 3e-79 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 246 / 4e-79 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 179 / 9e-55 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 181 / 2e-51 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10035151 [exp] 154 / 8e-43 AT5G51170 306 / 7e-101 unknown protein Lus10006342 [exp] 132 / 2e-34 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019144 [exp] 114 / 9e-29 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 107 / 1e-28 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 120 / 4e-31 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 109 / 4e-27 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 102 / 2e-24 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 97 / 2e-22 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 84 / 7e-18 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 57 / 4e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G034500 [exp] 56 / 1e-08 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G042900 [exp] 55 / 3e-08 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G136200 [exp] 54 / 7e-08 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.011G121500 [exp] 52 / 2e-07 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002959 pacid=23142138 polypeptide=Lus10002959 locus=Lus10002959.g ID=Lus10002959.BGIv1.0 annot-version=v1.0 ATGAATCGACTAGCTGGCGTTAGGGAGCTTCCTGCTGACGTAATATCTATCATATTAACGCTCATACCCATCCGGGAAGCTGTCAGGACCAGCATCCTGT CAACACAATGGAGGCATCGTTGGAGAAGCATCCCTCAGCTCGTATTCGATTCCAGTTTCGCTATGATCGATGACCCTGTCGTCGCAAACCAGGACAAGTT AGAAATTATTCTCAACGTCCGCCAAACCCTGATGGGTCATCAAGGTTCCTTAAACAAGTTCGAGCTTGCAATCCCTGGAATGAGCCTTTGTCCTCAGGTT GATCGGTTGCTCCGTTACCTTTCTACGAAACATGTCAAGGAACTATCCCTCCTCTTCACCAGGAGTGATCAGCCTTATTCAGTTCTTTCTTTCCCGGACA TGACAAGCCTGAAACTGCAAGGTTTCAAATTTGTGCTACCTCCTCGGTTTGTCGGATTCGGTAAGCTTACCGTTCTTGATTTGACAGACTTAATCCTGCC CTGTGGTTTTTACGAGGTTTTCCTTCCGCTATGTCCTCTGCTTGAAGAGTTGAGGGTTGTAGATCACCGCAACGTCAACAACAAGAAACCTGTGTTTTCA GCTCCATGTCTTAGAGTGCTTCTCTTCAGCTCGTCTTTCGAGTCGATTTCCTTCAAGCATACGCCATGTCTTTCGGTTCTGTCGATTCTAGATGTTGGTG AGTTTGATTACTGCGATGGATTCTTCACAGAGCATAATCCTGATATGGTGGCTCTATTTGATGCTCTCCCAGCACTTGAGGAGCTGAATATTGGGCTTGA ATTGGTGCTGTTCCTTTCGGAAGGCCATGTCCCTTACCAGCTGCCTGCAACTCTCGACAACTTAAAATGCCTCCAAGCTAGTAACATTGTTGGCACCATA TTACTGCCTTGA
AA sequence Show only first row Show all	>Lus10002959 pacid=23142138 polypeptide=Lus10002959 locus=Lus10002959.g ID=Lus10002959.BGIv1.0 annot-version=v1.0 MNRLAGVRELPADVISIILTLIPIREAVRTSILSTQWRHRWRSIPQLVFDSSFAMIDDPVVANQDKLEIILNVRQTLMGHQGSLNKFELAIPGMSLCPQV DRLLRYLSTKHVKELSLLFTRSDQPYSVLSFPDMTSLKLQGFKFVLPPRFVGFGKLTVLDLTDLILPCGFYEVFLPLCPLLEELRVVDHRNVNNKKPVFS APCLRVLLFSSSFESISFKHTPCLSVLSILDVGEFDYCDGFFTEHNPDMVALFDALPALEELNIGLELVLFLSEGHVPYQLPATLDNLKCLQASNIVGTI LLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10002959 [exp]	0	1
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	9.5	0.8359
					Lus10008816 [exp]	20.5	0.8195
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	26.6	0.8172
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	30.8	0.8164
					Lus10010481 [exp]	34.5	0.8136
					Lus10002266 [exp]	36.4	0.8100
					Lus10014719 [exp]	39.0	0.8117
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	40.4	0.7717
					Lus10024084 [exp]	42.9	0.8107
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	43.2	0.7849

Compare expression of checked genes

Lus10002959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.