Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 560 / 0 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 497 / 4e-169 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT3G14810 451 / 1e-149 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G53470 449 / 7e-149 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 442 / 1e-146 Mechanosensitive ion channel family protein (.1) AT1G78610 429 / 4e-141 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17010 305 / 1e-94 Mechanosensitive ion channel family protein (.1) AT1G49260 47 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006347 [exp] 1009 / 0 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 582 / 0 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 578 / 0 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 572 / 0 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 535 / 0 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 525 / 3e-180 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10029701 [exp] 509 / 4e-174 AT5G12080 523 / 9e-177 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 476 / 9e-159 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 475 / 2e-158 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144100 [exp] 759 / 0 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 612 / 0 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 561 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 537 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.001G384100 [exp] 447 / 2e-147 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 446 / 2e-147 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 439 / 1e-144 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 418 / 3e-137 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10002960 pacid=23142129 polypeptide=Lus10002960 locus=Lus10002960.g ID=Lus10002960.BGIv1.0 annot-version=v1.0 ATGAACAATTCCCACATTTGGGGGTTGCGGCTCTGGAAATGGTTCGTTCTGCTACTGGTTATTTTCTGCGGTAGATTGGCTACTGAATACACAGTCAACG TTTTGGTGTTCTTGATTGAAAGAAATTTCTTGCTCAAGAAGAAAGTACTGTATTTTATCTATGGGTTGAAGGACAGTTTCCAAGTGTTCATTTGGATAGG ATTGGTGCTATTAGCTTGGGGGTTGTTATTCCATCTTGGAATTGACAGATCTCCAGGGACTAATAAGGTACTCAACCGAATCACTCGAGCGATTTCGGGG GTTCTGATTGCGGCAGGAATTTGGCTGCTGAAGACTCTGGTGATCAAGTTGGTAGCTTCTTCTTACCATGTCAATAGATTCTTTGACAGAATCCAGGAGT CAATCTTCCATCAGTATGTTCTGAGGGCTCTCTCGGGTCCTCCAGTGATGGAAATGGCCGAGTCGGTTGGGAGAGGAGTTTTGACGCCTGGTCAGTTGAG CTTTCGGAGCATAGATAAGGATAAGGATCAGCAGAAAGAAGAGGTGATTGATATGGATAAGCTTAAGAAGCTGAAGCATGAGAAGGTCTCGGCTTGGACT ATGAAAGGTTTGGTTGATGTGGTCCTTGGCTCGGGATTGTCTACTCTTTCGAGTATGCTCGAGTTTACGGAAGAGAATGAGGAGGAGTATGGGCAGCGAG ATTACGAGATTACTAGCGAGTGGGAAGCTAAAGCTGCTGCTTATAAGGTCTTCAGGAATGTAGCGAAATCCGGCAGCAAGTACATTGACGAAGAGGACTT GTTACGATTCTTGAAGAAAGAAGAGGTGGATAATTTCATTCTCTTGTTTGAAGGAGCTTCTGCAACTGGGAAGATTAAGAGATCTGTTTTCAAGAAATGG CTGGTGAAGGTGTACAAGGAGCGGAAATCGCTAGCGCATTCGTTAAACGACACGAAAACAGCAATCGAGGAGCTGAACAAGTTGGTTTCGGTGGTTCTGA TTCTCGTCAGCATTGTGGTTTGGTTACTAGTGATGGGATTCCTATCAACTCAAGTGCTTGTTTTCATCTCCTCACAAATCTTGTTAGCTGGATTCATGTT TGGCAATACTGCCAGGACGGTGTTTGAAGCTATCGTGTTCGTGTTTGTGATGCATCCCTTTGATGTTGGAGACCGATGTGTCGTTGATGGAATCCAGATG ACCGTAGAAGAGATGAACCTGTTAACGACGGTGTTCCTCAGGTACGACAACGAGAAGATTTTCTATCCAAACTCGGTCCTGGCAGCCAAACCAATCAGCA ACTTCTACAGAAGCCCTCAGATGAGTGATTCGGTGGAGTTTGCTGTCGATGTTTCAACTTCGATGGATGACATTGGAGCCGTGAAGGGAAAGATCAAAGC TTTCTTAGAGAGCAAGCCGCAGTACTGGCGACCGGACCATAGCGTACTAGTGAAAGGAATCGAGGACATGAACAAGATGCATATGGGACTTTATGTGAAT CACACCATGAATTTCCAGAATGGGGAGAGAGGAAACAGAATCTCTGATCTGGTTGTGGAGATGAAGAAGATCTTTGAGGAAATCGGTATCAAATATCATC TGCCGACTCAGGAAGTTCATGTAAGGTATGTCGGAGGAGGTACATAA
AA sequence Show only first row Show all	>Lus10002960 pacid=23142129 polypeptide=Lus10002960 locus=Lus10002960.g ID=Lus10002960.BGIv1.0 annot-version=v1.0 MNNSHIWGLRLWKWFVLLLVIFCGRLATEYTVNVLVFLIERNFLLKKKVLYFIYGLKDSFQVFIWIGLVLLAWGLLFHLGIDRSPGTNKVLNRITRAISG VLIAAGIWLLKTLVIKLVASSYHVNRFFDRIQESIFHQYVLRALSGPPVMEMAESVGRGVLTPGQLSFRSIDKDKDQQKEEVIDMDKLKKLKHEKVSAWT MKGLVDVVLGSGLSTLSSMLEFTEENEEEYGQRDYEITSEWEAKAAAYKVFRNVAKSGSKYIDEEDLLRFLKKEEVDNFILLFEGASATGKIKRSVFKKW LVKVYKERKSLAHSLNDTKTAIEELNKLVSVVLILVSIVVWLLVMGFLSTQVLVFISSQILLAGFMFGNTARTVFEAIVFVFVMHPFDVGDRCVVDGIQM TVEEMNLLTTVFLRYDNEKIFYPNSVLAAKPISNFYRSPQMSDSVEFAVDVSTSMDDIGAVKGKIKAFLESKPQYWRPDHSVLVKGIEDMNKMHMGLYVN HTMNFQNGERGNRISDLVVEMKKIFEEIGIKYHLPTQEVHVRYVGGGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10006347 [exp]	1.0	0.8916
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10029274 [exp]	1.7	0.8420
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	3.7	0.8580
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	6.0	0.8213
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	13.5	0.7875
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10037848 [exp]	14.8	0.7419
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	19.7	0.7860
AT1G17100			SOUL heme-binding family prote...		Lus10029117 [exp]	20.8	0.7654
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	23.9	0.7885
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	24.0	0.7530

Compare expression of checked genes

Lus10002960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.