Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11820 732 / 0 FKP1, EMB2778, MVA1, BAP1, HMGS FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006348 [exp] 819 / 0 AT4G11820 768 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111700 [exp] 758 / 0 AT4G11820 795 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2) Potri.003G120300 [exp] 752 / 0 AT4G11820 796 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2) Potri.003G120400 [exp] 479 / 2e-171 AT4G11820 470 / 3e-167 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF01154 [flax] [poplar] HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal CL0046 [flax] [poplar] Thiolase PF08540 [flax] [poplar] HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal
Representative CDS sequence Show only first row Show all	>Lus10002961 pacid=23142133 polypeptide=Lus10002961 locus=Lus10002961.g ID=Lus10002961.BGIv1.0 annot-version=v1.0 ATGGCGAAGAATGTTGGAATTTTGGCCATGGACATCTACTTCCCTCCTAGCTGTGTTCAACAGGCAGCTCTGGAAGAGCACGATGGAGAGGGTAAAGGGA AGTACACAATTGGACTTGGACAGGATTGTATGGCATTTTGTACCGATGTAGAAGACGTCATCTCAATGAGTTTGACGGCTGTTACTTCACTCCTGGAGAA GTATGGTGTTGATCCCAAGCAAGTTGGCCGTCTTGAAGTTGGAAGTGAGACCGTGATTGATAAGAGCAAATCCATCAAGACTTTCCTGATGCAGATATTT GAGAAATGTGGAAACACGGATATAGAAGGTGTCGACTCAACCAATGCATGCTACGGAGGAACTGCAGCTCTGTTTAACTGTGTCAATTGGGTTGAGAGTA ATTCCTGGGATGGTCGCTATGGGCTCGTCGTGTGTACTGATAGTGCGGTCTATGCTGAAGGACCAGCCCGACCTACTGGAGGAGCTGCAGCAATTGTTAT GCTAATAGGCCCCGAAGCGCCCATTGTTTTTGAAAGCAAATATAGGGGGAGTTATATGTCACATGCCTACGACTTTTACAAGCCCAACCTTGCCAGTGAA TATCCGGTTGTAGATGGCAAGCTTTCTCAAACATGCTATCTCATGGCTCTTGATGCCTGCTACAAACATTTTTGTGCTAAGTATGAGAAGTTTGAAGGAA AACAGTTTTCTATTTCTGATGCTGACTACACTGTTTTTCATTCTCCTTATAACAAGCTGGTACAGAAAAGCTTTGCTCGGTTACTATTTGACGACTTCAC AAGGAAAGCAAGCTCCATCGACGAGGCTGCTAAAGAGAAGTTTGCACCATTTGCAACTTTATCAGGTGATGAGAGCTACCAAAGCCGGGATCTTGAAAAG GTGGCCCAACAAGTTGCCAAGCCATTATATGACACCAAAGTTCAACCAACGACATTGATACCGAAGCAAGTTGGGAACATGTACACTGCATCTATCTATG CAGCCTTCGCGTCCCTTCTGCACAACAAAAACAGTGCATTGGCGGGGAATCGGGTTCTTATGTTCTCTTACGGAAGTGGTCTAACAGCCACAATGTTCTC ACTCAAATTACAGGAAGGACAAAGTCCTTTTAGCCTGTCCAACATTGCTTCCGTGATGAACGTTGATGAGAAGTTGAAGTCAAGAATTGAGGTTCAGCCG GAGAAGTTCGTGGAGACCCTGAAGCTGATGGAGCACAATTCGGGGTGA
AA sequence Show only first row Show all	>Lus10002961 pacid=23142133 polypeptide=Lus10002961 locus=Lus10002961.g ID=Lus10002961.BGIv1.0 annot-version=v1.0 MAKNVGILAMDIYFPPSCVQQAALEEHDGEGKGKYTIGLGQDCMAFCTDVEDVISMSLTAVTSLLEKYGVDPKQVGRLEVGSETVIDKSKSIKTFLMQIF EKCGNTDIEGVDSTNACYGGTAALFNCVNWVESNSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIVMLIGPEAPIVFESKYRGSYMSHAYDFYKPNLASE YPVVDGKLSQTCYLMALDACYKHFCAKYEKFEGKQFSISDADYTVFHSPYNKLVQKSFARLLFDDFTRKASSIDEAAKEKFAPFATLSGDESYQSRDLEK VAQQVAKPLYDTKVQPTTLIPKQVGNMYTASIYAAFASLLHNKNSALAGNRVLMFSYGSGLTATMFSLKLQEGQSPFSLSNIASVMNVDEKLKSRIEVQP EKFVETLKLMEHNSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	0	1
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	5.7	0.9174
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	6.6	0.9118
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	7.2	0.9216
AT1G47290		AT3BETAHSD/D1	3beta-hydroxysteroid-dehydroge...		Lus10000358 [exp]	10.3	0.8698
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10023074 [exp]	10.8	0.9043
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	13.0	0.8883
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	14.3	0.9075
AT5G63040			unknown protein		Lus10027687 [exp]	15.0	0.8869
AT1G26640			Amino acid kinase family prote...		Lus10026636 [exp]	15.0	0.8683
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	19.6	0.8900

Compare expression of checked genes

Lus10002961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.