Plant FIBer expression Database

Lus10002963 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51910 52 / 3e-08 TCP TCP19 TCP family transcription factor (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006349
[exp]
191 / 6e-63 ND 49 / 6e-07
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G111800
[exp]
92 / 1e-22 AT2G45680 169 / 8e-49 TCP family transcription factor (.1)
Potri.002G152200
[exp]
52 / 3e-08 AT2G45680 286 / 6e-95 TCP family transcription factor (.1)
Potri.014G078500
[exp]
50 / 2e-07 AT2G45680 257 / 1e-83 TCP family transcription factor (.1)
Potri.012G135900
[exp]
41 / 0.0001 AT5G51910 219 / 1e-69 TCP family transcription factor (.1.2)
Potri.015G138200
[exp]
39 / 0.0006 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2)
PFAM info
Representative CDS sequence
>Lus10002963 pacid=23142144 polypeptide=Lus10002963 locus=Lus10002963.g ID=Lus10002963.BGIv1.0 annot-version=v1.0
ATGACGGCGGCGGCGGCTCAAGGATTGGTTCCCGTTTGGGCAGTTGGGAGCAGCGGGATGATGGTCCCAGCTAACGCGATCTGGATGATACCTCAGGGCC
AGGGCGGTATTGGGCCTGGTGGGACTAATTACGGGCCTGTGGGTAATCAGCAGCAGCAGGCCCAGTTGTGGGCCTTATCTCCTCCCGTTTTCAACGTCAC
GCAGGCCAACTCGGTGCCGGCAGCTAGGCCCTTTTCGTCTTACGTGGCGGCGAACAGCGGTAGTAACGGTCACCTCCCCTCCGGCGGAGGAATGGCCAAG
AGATCTTCGGCAATGGCACCCAGCGTGAGCTCCGGCGGAGGGAAAGTCCGTATGGTACGGGACTTTTCGCTCGAGATTTACGAGAAGCAGGAGTTGCAAC
TGATGGACGGACGCGGCGGTGGTGGCGGTGGAGGGAACAATCAGTCTCAAGGGAAGAGTTCTGCAGAGTCGTGA
AA sequence
>Lus10002963 pacid=23142144 polypeptide=Lus10002963 locus=Lus10002963.g ID=Lus10002963.BGIv1.0 annot-version=v1.0
MTAAAAQGLVPVWAVGSSGMMVPANAIWMIPQGQGGIGPGGTNYGPVGNQQQQAQLWALSPPVFNVTQANSVPAARPFSSYVAANSGSNGHLPSGGGMAK
RSSAMAPSVSSGGGKVRMVRDFSLEIYEKQELQLMDGRGGGGGGGNNQSQGKSSAES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G51910 TCP TCP19 TCP family transcription facto... Lus10002963
[exp]
0 1
Lus10002962
[exp]
1.0 0.8668
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(... Lus10008680
[exp]
9.3 0.6977
AT5G50360 unknown protein Lus10038406
[exp]
9.8 0.7524
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Lus10004182
[exp]
13.3 0.6847
AT1G21720 PBC1 proteasome beta subunit C1 (.1... Lus10004885
[exp]
21.3 0.6781
AT3G02520 GENERALREGULATO... general regulatory factor 7 (.... Lus10017584
[exp]
27.3 0.6830
AT1G28360 AP2_ERF AtERF12 ERF domain protein 12 (.1) Lus10013993
[exp]
28.9 0.6796
AT3G25545 unknown protein Lus10029095
[exp]
29.7 0.6509
AT1G78190 Trm112p-like protein (.1) Lus10024634
[exp]
34.2 0.6285
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10032041
[exp]
37.2 0.6608

Lus10002963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.