Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59100 624 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT3G46850 623 / 0 Subtilase family protein (.1) AT3G46840 607 / 0 Subtilase family protein (.1) AT5G59090 606 / 0 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59120 604 / 0 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 602 / 0 Subtilase family protein (.1) AT5G59130 591 / 0 Subtilase family protein (.1.2) AT5G59190 590 / 0 subtilase family protein (.1) AT5G58830 583 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 577 / 0 XSP1 xylem serine peptidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042555 [exp] 1361 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 687 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 680 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10009868 [exp] 635 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 627 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004683 [exp] 624 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10004686 [exp] 618 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040750 [exp] 607 / 0 AT5G59120 714 / 0.0 subtilase 4.13 (.1) Lus10016484 [exp] 599 / 0 AT5G59100 672 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133200 [exp] 780 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.003G120101 [exp] 745 / 0 AT5G59190 536 / 0.0 subtilase family protein (.1) Potri.010G196900 [exp] 703 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 702 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G037900 [exp] 639 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 633 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 627 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 597 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 590 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 542 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10002964 pacid=23142143 polypeptide=Lus10002964 locus=Lus10002964.g ID=Lus10002964.BGIv1.0 annot-version=v1.0 ATGAACACGATCGGAAGTGACCGGCGCCGGTGGCTCTCAGTTCTTTATCCGATAGTGCTGCTGGCAGCAATGCTAGTGCACTGCAACGCCGACGACGGGA GGAAGATTCATGTTGTGTACATGGGAGACCTGCCAGATGACGGCGTTACGTCGGCTCACCACGTTTCCCTGTTGGAAAATGTTATGGGCAGCTCTTCACT GGCGGAAGAATCGCTGGTGTACAGCTACGGAAGGAGCTTCAATGGCTTTGCCGCCAAATTATCACCTGAAGAAGTTGAAAAGTTCTCAAAGATGGAGAGT GTGATCTCTGTAATCCCGAACCGCAAGCTACAACTTCACACCACTCGTTCATGGGAGTTCATGAATTTCTCTCCTATGCAAATTAGCCCGCGAGCAGAAG GAGATGATGTCATCATTGGCCTTCTCGATTCAGGAATTTGGCCGGAATCGGAAAGCTTCAGCGACGAAGGAATGACTCCGACGCCGGCGAGGTGGAGAGG AGAATGCCACAAGAACATTACCTGCAACAAAAAAATCATCGGAGCCCGGTACTACAACAGCCACGGCAACTACGACGACAAGGAATTTAAGTCCCCCAGA GACGCAGAAGGACACGGGAGCCACACTTCTTCCATCGCCGCCGGCCGGGAAGTAGCCGGAGTTAGCTTTTTCGGTTTAGCGGAAGGAACTGTGACTGGTG GGGTTCCGAATGCCAGGATCGCTGTTTACAAAGTCTGCTGGTTGAGTTTCCATTGCAATCTCGCCGACGTCCTCGCCGGATTCGATGACGCCATCGCAGA CGGCGTCGACATCTTGTCCATGTCTTTAGGGGTATTGGGTGGCTCGCCTCCGTTCTTCGAGGATCCCTTGGCCATCGGGGCTTTCCATGCCATGAAACAC GGCGTGTTAACCGTGGCCTCCGGCGGCAACGAGGGTCCTTTGCCCGGGCTTGTGACCAACGTAGCGCCGTGGATTTTGACCGTGGCGGCGAGTACTATAG ACCGCAAGTTCGTTACCAAAATCTTCCTTGGAAATGGACAAACCTTCATTGGCTCATCTATTGATAGCTTCGATCTGAGTGGAACTACAATACCCTTGGT ATGGGCTGGAAACGTGGCGAATTACTCCGGTAATCACAGCACCGACTACGTCGACCGTTGCTTGCCAGACAGTCTTGATTCAAACAAAGCAGCTGGGAAT ATTATCCTCTGTAACGGTTCAGATGCAGACTTCATTGGAGCTATGATGGCTAATGGTGCGGCAACAATTCTGGCCTTCCCGGATCCTTTCGTCAGCGATG TTGCGTACGCTTATCCTTTCCCTACGATTCGAGTTAGCAGGGGAGATTGTGATGCGATTCTTGAGTACATTAGAACAACAAAGGATCCCATTGCAACTAT ACTTGCTGGTGAAACATGGGAGGATGTTATGTCGCCTTACATTGTTTCCTTTTCTTCTAGAGGACCAAACAGTCTCAGCCCTGAGATCCTTAAGCCAGAC ATCACCGCGCCTGGTGTCGATATCCTGGCCGCTTGGTCTCCTGTCAGTCCGCCTTCAGGGTTTGAATTCGATACAAGGGAGGCACACTACAATATGATTT CCGGGACATCGATGTCTTGCCCACACGTAAGCTCGGTTGCTTCATATGTCAAGGCTCTACATCCAGAATGGTCCCCTGCCGCGATTAAATCTGCAATCAT GACGACAGCTACAATAATGGACCCTAGGAAGACCAACGCTAGCGAATTCGCCTATGGTGCTGGCCACGTCAACCCATTGGCAGCAGCGAAACCAGGGCTG GTGTACGATGCGTACGAAGCCGATTACATCCACTATCTCTGCAAGCAAGGATACAACACCAGCCAGATAAAGTTGGTCGCCGGCCAGAGCAACACTTCTT GTGATGGAGTGGTTCCAGGGAGAGCTTGGGATCTGAACTATCCCACATTTGGACTAGTGGTGGAAGATGGTCAACCGATCAGCGCAACTTTCACCAGAAC GGTAACAAACGTTGGCACTTCGAATTCCACTTATTATGTCAGTACAGAGATGCCGGATGTTGCGACGGTGGAAGTTAGTCCAGCGGTGTTGTCTTTCTCG GATGTTTGGGAGAAGAAGACGTTTACGGTGAAAGTCTCGGGTCCGAAGATCGTGGAGGACGCGATTGTGTCGGGAGCCATTGTGTGGGAAGATGGAGTTC ATGTGGTTCGGAGTCCGTTGGCTGTTTATACATTTACGCCGAAGTCTGCTGATACGGTTGCTTCGCGCTTCAGATCAACTGATCATAAGAGCAGATTCAG GGAGCCATGA
AA sequence Show only first row Show all	>Lus10002964 pacid=23142143 polypeptide=Lus10002964 locus=Lus10002964.g ID=Lus10002964.BGIv1.0 annot-version=v1.0 MNTIGSDRRRWLSVLYPIVLLAAMLVHCNADDGRKIHVVYMGDLPDDGVTSAHHVSLLENVMGSSSLAEESLVYSYGRSFNGFAAKLSPEEVEKFSKMES VISVIPNRKLQLHTTRSWEFMNFSPMQISPRAEGDDVIIGLLDSGIWPESESFSDEGMTPTPARWRGECHKNITCNKKIIGARYYNSHGNYDDKEFKSPR DAEGHGSHTSSIAAGREVAGVSFFGLAEGTVTGGVPNARIAVYKVCWLSFHCNLADVLAGFDDAIADGVDILSMSLGVLGGSPPFFEDPLAIGAFHAMKH GVLTVASGGNEGPLPGLVTNVAPWILTVAASTIDRKFVTKIFLGNGQTFIGSSIDSFDLSGTTIPLVWAGNVANYSGNHSTDYVDRCLPDSLDSNKAAGN IILCNGSDADFIGAMMANGAATILAFPDPFVSDVAYAYPFPTIRVSRGDCDAILEYIRTTKDPIATILAGETWEDVMSPYIVSFSSRGPNSLSPEILKPD ITAPGVDILAAWSPVSPPSGFEFDTREAHYNMISGTSMSCPHVSSVASYVKALHPEWSPAAIKSAIMTTATIMDPRKTNASEFAYGAGHVNPLAAAKPGL VYDAYEADYIHYLCKQGYNTSQIKLVAGQSNTSCDGVVPGRAWDLNYPTFGLVVEDGQPISATFTRTVTNVGTSNSTYYVSTEMPDVATVEVSPAVLSFS DVWEKKTFTVKVSGPKIVEDAIVSGAIVWEDGVHVVRSPLAVYTFTPKSADTVASRFRSTDHKSRFREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59100			Subtilisin-like serine endopep...		Lus10002964 [exp]	0	1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	4.7	0.7389
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	11.0	0.7095
					Lus10033096 [exp]	12.2	0.7095
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	13.4	0.7095
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	14.5	0.7095
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	17.3	0.6990
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	20.9	0.6930
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	25.5	0.6880
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	25.5	0.6982
AT3G44150			unknown protein		Lus10021005 [exp]	25.7	0.6863

Compare expression of checked genes

Lus10002964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.