Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009341 [exp] 394 / 6e-137 ND / Lus10003602 [exp] 107 / 1e-25 ND / Lus10007176 [exp] 84 / 3e-19 ND / Lus10028108 [exp] 63 / 8e-12 ND / Lus10033803 [exp] 47 / 4e-06 AT5G38435 45 / 3e-06 S-protein homologue 8 (.1) Lus10011794 [exp] 47 / 2e-05 ND / Lus10010583 [exp] 45 / 2e-05 ND 36 / 0.010 Lus10042562 [exp] 46 / 3e-05 ND / Lus10007786 [exp] 45 / 5e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091800 [exp] 50 / 2e-06 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002965 pacid=23142135 polypeptide=Lus10002965 locus=Lus10002965.g ID=Lus10002965.BGIv1.0 annot-version=v1.0 ATGGCCCGAAGATCGAGATGCAGTCCGAAGAGGATAGTGACAATGCTCAATCATATCACAAAAGAGGACCTAGATTCCCTAGCTGAAGTAGGGTTTTCTG GTGTAATGAAGATCAAAATCACCAGAATGTCTGAGGAATTCCTCAAGTGGGCAGTAGACCACTACGAAGTCTCATCGAAATCATTCACATTAGACGGGAA CAAGAAGTTCCGACTCACTGAAGACGATGTGGCAAGGGTGTACGGCCTACCACGAGGGACGAATCATGTAGATCTCGATAAAAATCCGACTTTCTTGCTG AAGGAATTTGGAGCGGAACTGAACATTGGAGATGACAAATCCGGGAAGGACAATGTGGAACTGTTAGTCCTTAAGAAGAGAGTAACTGAGGAGTCGGATA TAGTTAAGAGGAGGAAGTTGTTGATTTTGTACATCATGGGTGGACTACTTTGCCCCAACTCCCATCCGGTTGCTAACCTTGGATACCTCCCGCTGTTGAG CGAACAGGTTCTGCCTGATTTCGGAAACTATAACTGGTGCAGACATGTCGTTGATCACTTCCACAACGGCATGGTCGCTTCGAAGAAGAATAAGTATATT TGTGCAGACGTACACTTGTTGTTGGCGTATACACTCAAGAATTGGTACGAGATGGCACGAGCTACCTGCGAAAGTCATATTGCAACTTTGGACGACCACA TTGCTCGATTAACCGATGAGGGCACGACAAAAATGCAGGGGAACGATAAAATCGTAGAACTTGAAGAAGAACGATTGATGTACGAGAACAATAAGGTGAA AGACGAATCTATAGAACAAATGGACGTATTCAAAGAGACAACCGATGCTGATTTGGAGCTCAGTAACACTTTGCTCAGCATAAAAGATCCATGCAACGTT AACAAGGACGATAACGTGAGAAAATTGGTCGCGAAAAGGAAGCTGATCTCGTCATAA
AA sequence Show only first row Show all	>Lus10002965 pacid=23142135 polypeptide=Lus10002965 locus=Lus10002965.g ID=Lus10002965.BGIv1.0 annot-version=v1.0 MARRSRCSPKRIVTMLNHITKEDLDSLAEVGFSGVMKIKITRMSEEFLKWAVDHYEVSSKSFTLDGNKKFRLTEDDVARVYGLPRGTNHVDLDKNPTFLL KEFGAELNIGDDKSGKDNVELLVLKKRVTEESDIVKRRKLLILYIMGGLLCPNSHPVANLGYLPLLSEQVLPDFGNYNWCRHVVDHFHNGMVASKKNKYI CADVHLLLAYTLKNWYEMARATCESHIATLDDHIARLTDEGTTKMQGNDKIVELEEERLMYENNKVKDESIEQMDVFKETTDADLELSNTLLSIKDPCNV NKDDNVRKLVAKRKLISS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002965 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	5.7	0.6405
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	12.2	0.6287
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	15.6	0.6160
AT5G46090			Protein of unknown function (D...		Lus10033645 [exp]	25.3	0.5858
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10019471 [exp]	26.2	0.6038
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001049 [exp]	33.3	0.5868
AT1G48360			zinc ion binding;nucleic acid ...		Lus10037442 [exp]	34.2	0.6151
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10020371 [exp]	43.0	0.5631
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10011025 [exp]	48.9	0.5910
AT1G74400			Tetratricopeptide repeat (TPR)...		Lus10002903 [exp]	53.1	0.5780

Compare expression of checked genes

Lus10002965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.