Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50530 925 / 0 CRK CDPK-related kinase (.1.2) AT2G41140 827 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 822 / 0 Protein kinase superfamily protein (.1) AT1G49580 798 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G19100 793 / 0 Protein kinase superfamily protein (.1) AT2G46700 689 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 648 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 625 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 489 / 7e-167 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 458 / 3e-155 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025270 [exp] 793 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 777 / 0 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10008875 [exp] 664 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 628 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10041914 [exp] 466 / 7e-158 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 462 / 4e-157 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 380 / 5e-125 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10038460 [exp] 377 / 1e-123 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 372 / 6e-122 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G040800 [exp] 954 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.005G135900 [exp] 951 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 856 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.004G143700 [exp] 852 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 804 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 800 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.002G176700 [exp] 708 / 0 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 702 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 689 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G057600 [exp] 454 / 2e-153 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002966 pacid=23142140 polypeptide=Lus10002966 locus=Lus10002966.g ID=Lus10002966.BGIv1.0 annot-version=v1.0 ATGGAAAGGCCTTGGAATTGGAGGAATTTTTTTGTACAAGAAGCTGATTATTCGTTCGATTTAGGTTTTTTTCGAGTTGTTTACGAGCTATGGGGCTGTG CACGTCGAAGCCGTCATCGCCGGACAGGAGCATACACGTATCGCATCAACAATCGGAGACTGGGCTTAGCTCGGCCGGTGCCGGCGTTCCGCCGGGCGGT GGTCCCGCGGTCTTGCGACGGCGGCGGGGAGAGGCGGGAGCAGGGGGAGAGTAGCTCGAGCGCTGATGATCAGAGGAGGAAGGAGAGGAAGGAGCTGGAG AATGTGAAGAAGTCTCCTTTTTTTCCTTTCTACAGTCCTAGTCCGGGGAACTACTTCTTCTCAAAGAAGTCGCCGGCGAGATCTCCGGCTCCGAGTGGTA ATTCCACGCCTAAGAGGTTTTTTAAGCGGCCGTTCCCGCCGCCGTCTCCTGCTAAGCATATACGAGCTGTTTTGGCGAGGAGGCATGGCTCTGTTAAGCC GAACGAGGCTTCGATCCCGGAAGGGAGTGAGGTGGATGGGATGGCTGCGCTTGATAAGAGCTTTGGGTTCTCTAAGCATTTTGGGAACAAGTACGAGCTG GGGGATGAGGTTGGAAGAGGGCATTTTGGTTATACCTGTGCGGCTAAGTTCAAAAAGGGTGAGCTTAAAGGACAGCAAGTTGCAGTCAAGGTCATCCCAA AAGCTAAGATGACCACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTCAAAATATTACGAGCTTTAACTGGACATAGTAACCTAGTGCAATTCTATGA TGCATATGAAGACGCCGATAATGTCTACATAGTAATGGAGTTGTGTGAAGGAGGGGAGCTTTTGGACAAAATTCTTGCAAGGGGAGGGAAATATTCAGAG GACGACGCCAAGACAGTAATGATACAGATATTAAATGTTGTTGCATATTGCCATCTACAGGGTGTGGTGCACCGGGATCTGAAACCTGAGAATTTCCTCT TCTCTACCAAGGAGGAGGATTCACAACTAAAAGCCATAGACTTTGGTTTGTCCGACTTTGTGAAACCAGATGAGAGATTGAATGATATTGTTGGGAGCGC ATATTACGTAGCCCCTGAAGTCCTCCATAGATCGTATAGTACCGAAGCTGACGTCTGGAGTATAGGTGTGATTGCCTATATACTATTATGTGGCAGCCGT CCCTTCTGGGCCCGGACAGAATCAGGTATCTTTCGGGCTGTTCTAAAAGCAGATCCAAGCTTTGATGAAGCACCTTGGCCATCTCTATCTCCTGAAGCTC GAGACTTTGTGAAGCGACTATTGAATAAAGACCCACGTAAAAGATTAACTGCTTCCCAAGCGTTAAGTCACCCATGGATCAAAGATTCTAATGACGTAAA AGTGCCCCTGGATATACTAGTGTTCAAGCTAATGAAGGCTTATATGCGGTCATCATCTCTCCGTAAAGCTGCTTTAAGGGCGTTATCTAAAACATTGACT GTAGACGAGCTGTTTTATTTGAAGGAGCAGTTTTCTCTGTTGGAACCGAACAAGAACGGCACAATAAGCTTGGACAATATCAAATTGGCGTTGATGAAAC ATGCAACAGATGCTATGAAGGAATCTCGAATCCCTGATTTCCTAGCATCGCTTAATGCGCTTCAGTACAGAAGAATGGACTTTGAGGAGTTCTGTGCAGC TGCATTGAGTGTCCATCAACTCGAAGCTGTGGACCGGTGGGAGCAACATGCACGTTGTGCCTACGAACTTTTCGAGAAGGATGGAAATCGGGCCATCATG ATTGAAGAACTGGCATCGGAACTCGGCCTCAGCCCTTCGGTCCCTGTCCATGCAGTCCTGCACGATTGGCTCAGGCACACAGACGGGAAGTTGAGCTTCC TGGGTTTCGTCAAGTTGTTGCATGGCGTATCTAGCCGTACTTTAGCAAAAGCTCAATAG
AA sequence Show only first row Show all	>Lus10002966 pacid=23142140 polypeptide=Lus10002966 locus=Lus10002966.g ID=Lus10002966.BGIv1.0 annot-version=v1.0 MERPWNWRNFFVQEADYSFDLGFFRVVYELWGCARRSRHRRTGAYTYRINNRRLGLARPVPAFRRAVVPRSCDGGGERREQGESSSSADDQRRKERKELE NVKKSPFFPFYSPSPGNYFFSKKSPARSPAPSGNSTPKRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEASIPEGSEVDGMAALDKSFGFSKHFGNKYEL GDEVGRGHFGYTCAAKFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHSNLVQFYDAYEDADNVYIVMELCEGGELLDKILARGGKYSE DDAKTVMIQILNVVAYCHLQGVVHRDLKPENFLFSTKEEDSQLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSR PFWARTESGIFRAVLKADPSFDEAPWPSLSPEARDFVKRLLNKDPRKRLTASQALSHPWIKDSNDVKVPLDILVFKLMKAYMRSSSLRKAALRALSKTLT VDELFYLKEQFSLLEPNKNGTISLDNIKLALMKHATDAMKESRIPDFLASLNALQYRRMDFEEFCAAALSVHQLEAVDRWEQHARCAYELFEKDGNRAIM IEELASELGLSPSVPVHAVLHDWLRHTDGKLSFLGFVKLLHGVSSRTLAKAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10002966 [exp]	0	1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	5.7	0.6706
AT5G38880			unknown protein		Lus10035250 [exp]	9.3	0.6221
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	21.5	0.5943
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	37.8	0.6041
AT1G76270			O-fucosyltransferase family pr...		Lus10012270 [exp]	42.5	0.5306
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023363 [exp]	47.7	0.5934
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	50.3	0.5641
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10014700 [exp]	59.7	0.5700
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	72.5	0.5608
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	72.5	0.5137

Compare expression of checked genes

Lus10002966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.