Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50590 1686 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009343 [exp] 2046 / 0 AT3G50590 2169 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041000 [exp] 1841 / 0 AT3G50590 2389 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G136300 [exp] 415 / 2e-128 AT3G50590 815 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10002967 pacid=23142139 polypeptide=Lus10002967 locus=Lus10002967.g ID=Lus10002967.BGIv1.0 annot-version=v1.0 ATGGAGTGGGAAACTGTGCAGCATCTGGATCTGCGGCATGTAGGTCGAGGTGTTCATCGGCGGTTGCAGCCTCATGCTGCTACGTTTCACCCTACTCAAG CTCTTGTAGCTGTGGCGATCGGGCCTTCCATAATTGAATTCGATGCTGTTACTGGTAGCAAACTCTCTACTATTAACATTGGGGCGCCTGTTGTACGCAT GGGTTACAGCCCTACCAGTGGCCATTCTGTGATTGCTATTCTAGAGGATTGTACGATTCGGGCATGTGATTTCGACACTGAGCAAACTTGTGTGTTGCAT TCTCCTGAAAAGAGATCCGAGCATATAACCATTGATACAGAAGTTCATCTGGCTTTGACTCCACTTCAGCCTGTTGTGTTTTTTGGTTTCAGCCGCAGAA TGAGTGTAACTGGTTGGGGGGAGAGCACCAACAAAGATCAAAACGGACTTGAAGAAGCCAATAATGAATCTTGCATGCCATCCACGGCTCCCTGTTTTGT GGATAATACCATCAAGCTCATTGGTGCCGGAGCGTTTGCCTTTCACCCTACATTAGAATGGATATTTGTTGGTGATAGGCGTGGTACACTTTTGGCGTGG GATGTCTCAACTGAGAGGCCAAGCATGATTGGAATAACCCAGGTGGGCTCACAACCAATTACATCAATATCTTGGCTCTCAATGTTGAAGCTACTTGTTA CTGTTTCAAAAGATGGAACTCTTCATGTGTGGAAAACACGGTTGATTGTCAATCCTAATAGACCATTGATGCCAGCAAACTTTTTCGAGGCAGCTGGAAT TGAGTCGATAGACATTCCTCGCATTTTGTCTCAGCAGGGAGGAGAAACAGTTTATCCTTTACCAAGGATTAGAACCTTAGAAGTTCATCCAAAATTGAAT TTAGCAGCTCTTCTATTTGCAAATATGGCGGGTGGCGATAATATGAGGAATAGGGCTGCGTATACCAGGGAAGGAAGAAAACAACTTTTTGCAGTCCTTC AAAGTGCAAGGGGATCATCAGCTTCTGTTTTGAAGGAAAAACTGTCATCCCTCGGTGCATCAGGAATTTTGGCTGAACATCAGCTCCAAGCAGAACTGCA AGAGCATCATCTGAAAGGGCATGGTCAGCCAACAATTTCAGACGTTGCAAGGAAGGCATTCCTTCACAGCCATTTTATGGAAGGCCATTCAAAAAGCACC CCAATATCACGACTGCCTCTGATTTCAATTTTAGACACCAAACATCATCTGAAGGACATACCTGTTTGCCAGCCTTTTCATTTGGAGTTGAATTTCTTCA ACAAAGAAAATCGAGTCCTTCACTATCCTGTGAGGGCTTTTTATGTGGAGGGTTTGAATCTTATGGCATACAATCTCTGCTCTGGAGGAGACAGCATCTA TAAAAAACTTTATACATCGATTCCTGGGAATGTGGAATACCATCCAAAGCACATGGTTTATGGTAAAATACAGCGGTTATTCCTGGTTGTTTATGAATTT AGTGGTTCTACAACTGAAGTTGTACTTTACTGGGAGAATACTAGTTACCAGGCAGCAAATAGTAAAGGAAGTACATTGAAAGGGCGAGATGCTGCATTTA TTGGTCCTAAGGAGACCCAGTTTGCAGTTCTTGATGAGGACAAGACAGGACTATCGCTTTATGTTTTGCCTGGAGGTGCTACAAAAGAAGGCAGTGATAA AGATTTATTGCTGGAAGAGAACCCTACTGCCGCGGAAGTAACAAAAGATGATGGGCCTCTTCAGGGTCCAATACAGTTTATGTTTGAAAGTGAAGTTGAT CGTATATTCTCCACTCCTATAGAGTCTACTTTGATGTATGTGTCCAACGGGGATCAGATTAGTTTTGCCAAGTTGGTAAAAGGTTCTCGTCTTTCAAATT CAGATGGCCATTACATACAGACGAAATCTGAAGGAAGAAAGTCAATTAAGTTGAAAATGAATGAACTCGTACTCCAGGTCCACTGGCAAGAAACTCCACG AGGTTTTGTCGCAGGAATATTGACCACTCGCAGGAATTTGTTGGCTAGACTGGTTTTCTATGTTGTACTTAACTTGGCGCACTTTAGATCCCTTCTGTGG ATTGGTCCTGCTCTTCTATTTTCGACCACTACTGCTGTCAGTTTGCTTGGATGGGACGGAACTGTGAGAACTATCCTTTCCATTAGCATGCCATATGCAG CTCTGGTGGGTGCATTGAACGATCGTTTGCTACTTGCAAATCCGACCGATATAAATCCCAGACAAAAGAAGGCCATCGAGATTAGGAGTTGTTTGGTTGG GCTTCTTGAGCCACTTCTAATCGGATTTTCCACAATGCAACAAACTTTCGAACAGAAGCTTGACCTTTCAGAAACACTGTACCAAATTACTTCAAGGTTT GATAGCTTGCGGATTACTCCAAGGGCACTTGAGATTCTTGCTAGGGGTCCTCCGGTTTGTGGAGATCTTGCAGTGTCGTTATCCCAAGCTGGTCCTCAGT TTACGCAGGTCTTGCGCTGTATCTATGCCATCAAAGCTCTTCGTTTTTCCACAGCGTTGTCTGTTCTTAAAGATGAGTTCTTGCGGTCAAGAGATTATCC GAAATGTCCTCCAACCTCTCATTTGTTCCACCGATTTCGACAGCTGGGATATGCTTGTATAAGATATGGTCAATTTGACAGTGCCAAAGAAACATTTGAA GTCATTGCAGACTACGAAAGCCTGCTCGATTTGTTCATATGCCACCTCAACCCTACCGCTATGCGCCGACTTGCTCAAAAACTGGAAGAAGAAAGTGTGG ATCCAGAATTGCGGCGATACTGCGAAAGAATTTTAAGAGTTAGGTCTACTGGATGGACGCAGGGAATTTTCGCAAACTTTGCCGCTGAGAGCATGGTCCC GAAAGGTGCCGAATGGGGCGGTGGCAACTGGGAAATGAAAACTCCTACTAATTTGAAGAGCATTCCTCAGTGGGAGCTTGCCGGAGAGGTCATGCCATAT ATGAGGACTGACGAGGGAACAATCCCCGCCATTATCACAGATCATATTGGTGTTTATCTAGGTTCAATTAAAGGCAGAGGCAATGTCGTAGAAGTGAGAG AAGATAGCTTAGTCAAAGCTTATATCCCTTCAGGCGACAATAAGCAGAACGGAGCTCCAGATTCTCTACATAAATCACTCTCCAGTAATTCCAAGGGAAA ACGTGATAGCAATTCAAACGGTGGTTCATTTACGAGTCTCGAAGCTCTTAAAAAACAAACTACTGGTTCATCTGCTGAAAAAGCCAAAGCAGAAGAGGAA TTCAAGAAAACATTATACAGTGCAGCCGGTGACGGCAGCAGTAGTGATGAAGAAGGAATGTCAAAAACCAAAAAGCTACAAATCCGGATAAGAGACAAGC CAATTTCATCAACAACTGTAGATGTCAATAAAATCAAAGAAGCCACGAAACAGCTTAAACTTGGTGATGCATTAGGTCCTACCCCGAGGACAAGACCACT AAGTGGCTCTCAAGATTTCGGTCAGCTCTTGTTGCAGCCTCCATCTGCTGTTAGCAGTGCCCCAGCTGCTGCAGTTGGAGTTTCGGCCCCTACTGATTTG TTTGGCTCCTTTATGCAACCGCCGCCAGGATCACAGCCAGCTTCGGCAGCCGGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTCGGACTACCTGATGGTGCCTTCTCAGGCTCC AATGTCTTCACAGCCTCTCGATCTGAGTGTCCTCGGAGTCGTGAATACTGATGAGCCTGGGAAATCTCCAGGACCTGCTACTCCATCATCTGTGCGCCCT GGGCAGGTTCCTCGTGGGGCAGCCGCTTCTATGTGCTTCAAGACTGGCCTTGCCCACCTTGAGCAGAATCAGCTCCCTGATGCATTGTCATGTTTCGATG AAGCTTTCCTTGCACTGGCCAAGGATTTCTCTCGCGGGGCTGATATTAAAGCTCAAGCAACCATCTGTGCCCAGTACAAGATTGCAGTTACGCTGCTCAA GGAAATTACAAGGTTGCAGAAGGTACAAGGACCCAATGTGCTCAGTGCGAAAGACGAAATGGGAAGGCTATCCCGACATCTGGGATCCTTACCTCTTCAA GCAAAGCACCGAATAAACTGCATACGAACCGCAATCAAGCGTAACATGGAAGTCCAAAACTTTGCCTACGCGAAACAGATGCTGGAGCTTCTCTTTTCCA AAGCTCCCCAAAGTAAGCAAGACGAGCTCAGAAGCCTCATCGACATGTGCGTCCAGAGGGGTTCCTCGAACAAGTCGATCGATCCTCAGGAAGACCCTTC CCAGTTCTGTGCTGCCACTCTTGGCCGGCTGTCGACAATCGGATATGACGTCTGCGATGTATGTGGAGCCAAATTCTCGGCTCGCTCTTCTCCTGGCTGC ATTATTTGCGGTATGGGCAGCATCAAAAGATCCGACTCAGTCGCTGGACCCGTTTCGCCATTCGGCTGA
AA sequence Show only first row Show all	>Lus10002967 pacid=23142139 polypeptide=Lus10002967 locus=Lus10002967.g ID=Lus10002967.BGIv1.0 annot-version=v1.0 MEWETVQHLDLRHVGRGVHRRLQPHAATFHPTQALVAVAIGPSIIEFDAVTGSKLSTINIGAPVVRMGYSPTSGHSVIAILEDCTIRACDFDTEQTCVLH SPEKRSEHITIDTEVHLALTPLQPVVFFGFSRRMSVTGWGESTNKDQNGLEEANNESCMPSTAPCFVDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAW DVSTERPSMIGITQVGSQPITSISWLSMLKLLVTVSKDGTLHVWKTRLIVNPNRPLMPANFFEAAGIESIDIPRILSQQGGETVYPLPRIRTLEVHPKLN LAALLFANMAGGDNMRNRAAYTREGRKQLFAVLQSARGSSASVLKEKLSSLGASGILAEHQLQAELQEHHLKGHGQPTISDVARKAFLHSHFMEGHSKST PISRLPLISILDTKHHLKDIPVCQPFHLELNFFNKENRVLHYPVRAFYVEGLNLMAYNLCSGGDSIYKKLYTSIPGNVEYHPKHMVYGKIQRLFLVVYEF SGSTTEVVLYWENTSYQAANSKGSTLKGRDAAFIGPKETQFAVLDEDKTGLSLYVLPGGATKEGSDKDLLLEENPTAAEVTKDDGPLQGPIQFMFESEVD RIFSTPIESTLMYVSNGDQISFAKLVKGSRLSNSDGHYIQTKSEGRKSIKLKMNELVLQVHWQETPRGFVAGILTTRRNLLARLVFYVVLNLAHFRSLLW IGPALLFSTTTAVSLLGWDGTVRTILSISMPYAALVGALNDRLLLANPTDINPRQKKAIEIRSCLVGLLEPLLIGFSTMQQTFEQKLDLSETLYQITSRF DSLRITPRALEILARGPPVCGDLAVSLSQAGPQFTQVLRCIYAIKALRFSTALSVLKDEFLRSRDYPKCPPTSHLFHRFRQLGYACIRYGQFDSAKETFE VIADYESLLDLFICHLNPTAMRRLAQKLEEESVDPELRRYCERILRVRSTGWTQGIFANFAAESMVPKGAEWGGGNWEMKTPTNLKSIPQWELAGEVMPY MRTDEGTIPAIITDHIGVYLGSIKGRGNVVEVREDSLVKAYIPSGDNKQNGAPDSLHKSLSSNSKGKRDSNSNGGSFTSLEALKKQTTGSSAEKAKAEEE FKKTLYSAAGDGSSSDEEGMSKTKKLQIRIRDKPISSTTVDVNKIKEATKQLKLGDALGPTPRTRPLSGSQDFGQLLLQPPSAVSSAPAAAVGVSAPTDL FGSFMQPPPGSQPASAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSDYLMVPSQAPMSSQPLDLSVLGVVNTDEPGKSPGPATPSSVRP GQVPRGAAASMCFKTGLAHLEQNQLPDALSCFDEAFLALAKDFSRGADIKAQATICAQYKIAVTLLKEITRLQKVQGPNVLSAKDEMGRLSRHLGSLPLQ AKHRINCIRTAIKRNMEVQNFAYAKQMLELLFSKAPQSKQDELRSLIDMCVQRGSSNKSIDPQEDPSQFCAATLGRLSTIGYDVCDVCGAKFSARSSPGC IICGMGSIKRSDSVAGPVSPFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	0	1
AT1G35220			unknown protein		Lus10010355 [exp]	1.4	0.9722
AT4G32640			Sec23/Sec24 protein transport ...		Lus10000939 [exp]	1.7	0.9655
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	2.8	0.9649
AT1G35220			unknown protein		Lus10036487 [exp]	3.2	0.9658
AT1G11160			Transducin/WD40 repeat-like su...		Lus10011224 [exp]	5.7	0.9176
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	6.0	0.9548
AT5G58510			unknown protein		Lus10031287 [exp]	6.0	0.9152
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	6.7	0.9561
AT4G39420			unknown protein		Lus10005786 [exp]	7.5	0.9535
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	7.7	0.9305

Compare expression of checked genes

Lus10002967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.