Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66820 85 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009344 [exp] 2016 / 0 AT5G66820 141 / 5e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G041300 [exp] 855 / 0 AT5G66820 109 / 1e-24 unknown protein Potri.005G136600 [exp] 840 / 0 AT5G66820 116 / 1e-26 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF12371 [flax] [poplar] TMEM131_like Transmembrane protein 131-like
Representative CDS sequence Show only first row Show all	>Lus10002968 pacid=23142137 polypeptide=Lus10002968 locus=Lus10002968.g ID=Lus10002968.BGIv1.0 annot-version=v1.0 ATGTCGACTCTGATGGACTCAGACGCTTCTTACTCAGCTCCGCCGCAGCTGAACCGCCGCCTCCGATACCATCGCCAGCTGGAGCTGGAGGAGAAGACTA TACGGAGGAAGAACTTCGTACCCTCCACTTGCTGCTTCCGGGGAGCGTTCAAGAGTGGCCATGAGCTCAACGTTATTCTGGTTCTCTTGTGCACCTTTCT ATTGCTGGTAAGGTGCGAACCTTGCATGTTGAATGGCAATGCAATTGAGAAAGCAGAGCATGTCGGGTGTGGTTCCTTTGCAGATGATCGGGTTGAAGGC ACTGTAGTTGATGATATGCATTCGGGGCTTGATGCTGGAAGTGCAATGGGAAGTGAGAATTCTGGATATGTTTGCACCAATGCTCATTCGTTCTGCTTTC TTTCGACGTTAACTGGTTATTTAAGGGAGGAAGATAAGGTTAGAGAAGTAGAACCGTCTAATTATCAGTCTGGCTGTCCATTGTCCTTAGAGTTGAATCA GCGCAGTAGTTTGGCAATTAACAAGAGCTGGTTACCGGATGATGGCTCGTTTGAGTTTATGAATGGCAGGACCGTTTTCTGTTCTTTGAATTCCCTTATT GATCAGAAAAAATCATCTTCCTCTGCTTCTTGTGGAGAATCTATGGATGGTTCTAAGTTTAGGCTAAACAAGCAGTTAGAGTTGACTGAATCTGTACCTT CAGGTGTCGGTCCCTCGCCAGGTATAGAAGTAAGTCATTCTAGTCTAGATTGGGGTCGGAAGTATTTATATTCTCCTTCAGTAGTTTTCTTGACGGTGGC AAATACCTGCAATGACAGCGTTTTGCATGTTTACGAGCCATTCAGTACCAACATGCAGTTCTATCCCTGCAATTTTAGTGAAGTTTTGCTAGGACCTGGC GAGGTAGCTTCTCTCTGTTTCATCTTCTTACCTAGATGGTTAGGCTTGTCCTCAGCTCACCTCATATTGCAGACAAGCTCTGGTGGTTTTGTAATCCAGG CCAAAGGTTACGGTGTGGAGTCCCCTTATGCCATCAGTCGTTTGACGAGCATTAACGTTCCTTCCAGTGGAGAGTTGAGGAAGAATTTGTCTATATTTAA TCCTTTCAATGAGCCCATCGTGGTGAAGGAAGTAAGTGCATTGGTGTCAATTTCATTAGGGAACATTTCGCATCAATCTGAAGCTACTTGTTCTTTAGGA AATTTCAAGTCTTCCAACAATCTTAGCCTGCTGAATGCCAAGGACTGGCTAACTGTTCAAAATGGACAAGCTACTGGTTTTCCTCTGCTGTCGTTGAGGC CTCATGAAAACTGGGAGGTTGCTCCAAACGAGAGAGGGGAAATTGTTGAGCTAGACTTCTCATTTGGATCAGAGGGAAGAGTTTTTGGCGCATTCTGTAT GCATTTGCTGAGGCCTTCCCAGAACGAGTCTGAAGCAATTGTCATTCCTCTTGAAGCTGCTCGGAGTGGAGGCAGGGCTCATGATAATGCCTTCAATTTG ATTTCAGTTTCGCTCGAGGCTTTGCCCTGTTATGCCTGCAAGACTCCTGTGGTTGCTATTTCCCTTTTCAACGGAGCTCATTATATGCTCAATGTTGTGA AGATTAGTGAAGTGGGATCAAGAATTTTCCAGATCAAGTACTCTGAAGGCTTGCTTCTTTTTCCTGGAAGTTCGACACAAGTAGCTCTGGTTGGTTGTCC TCAACCGCCATATGAGTTATGTGATTCAGAACCTGAGAATTGCAACTTAATTATTTTGACTAATGACTCCAGTACTCGGATTGAAGTCCCTGGCCAAGAT ATCATCTACATCTGTTCCAAACATCAGAAGGATTCATCCATTGGGTACCATAATGATTTTGTTGGAGCAGATGATCACAATCAAGGATCAAGGTCATTCG AAGCTGGGATGCAAGGATACAAGGAGTTGAAGTTACCCGAGACAGCAGAAGCAGATGAATTCGTTCTAGATAACTGGAAATCTCATATCACCGCAAGCGG AGTTTCTGTCATTAGTGACCAGGAGATGATATTCCCTGTCTTAGAGGTCGGTGATCATTTCTCCCAGTGGATATCTGTGAAGAATCCCAGTGATCAACCT GTTGTAGTGCAGCTCATTCTGAACTCGGCCGAAATTGTTGACAAATGCACTCCGGCTGGTAATATAGCGTCTCCTGCTGCTGGAAGCTTCATCCCGAATG GAATTGGTACCTCTAGGTACGGATTCTCCTTGGCGAAAACTGCCATCACTGAGGCTTATCTCCATCCCTATTCAGATGAAGCATTTCTAGGGCCAATTGT ATTTCACCCTTCAAATAGATGCACATGGAGTAGTTCAGCGCTGATAAGAACCAATCTCTCCGGTGTAGAGTGGTTCTCTCTGCGAGGAGTCGGAGGTTCG CTCTCTCTGGAGACCGTTGCAAACATAGAATTTCACCTCAACTTGCCTCTTCCTTTGAATACCTCTTCGTCGTATATGCTGTTTCAGATGGAAGAGACTT ACCAAGCTTGTTGCAGTCCATTAAAAAAGGAGCTTTCTTTAAAGAACACCGGAGACTTGCCGTTGCATGTAAAAGACATTAAAGTTTCCGGAAAGGAATG TTCTTCGGACGGGTTTCTGGTTCATCCTTGTGCCGGTTTTACTCTGGATCCTGGAGAATCAACCAAACTGAAGGTATCTTACCAGACCGACTTATCCGGA ACATCTGTGCATCGAGATCTCGAACTAACTTTAGTTGGTGGAAACTTTGTTATCCCTATGAAGGCTACTCTTCCTGTTTATGCTTTCAATCTCTGCAAGA AGTCGGTCTTCCTCGTACGGTTGAAGAAGTTCTTCGTAGCAGTGTTTTTCGTCGCCTCCGCAGTGTCCGTGGTTCTATACTATGTGCAACACCAAGGGAC AAACTTCGGCTCTCGGGATGATGGCGTGTTGAAGACGGAAAGAAGTGTCGAGAAATCCTCGAGAGTGCGTCGCAGTGACAAGAACATTAAGTTCTCTGCA GCCATTGATATGGACCATTTGGGTTTAGTTGGGGAAGGCAAATCACTGAAGTGGGAATCTCTTGAAAGAAACTATGATGATGGTGAAGAGAATCGAGCAG TTGTTCAGAACATGAAACCAACTCGACCCAGCATTGTTGAAGAGTCAGAACCAGACAAGCTTTCGGTCAATATAGGGAAAGAGAAAGGAAGAAGGAGAAG AAAGAGGAAGGGTGTTGTTGGTGGTATAGTAGGCCGGTTCGAAGTTTCGAGCAGTCAGAGTGGAAACTCTACACCGTCATCCCCTCTGTCTCCTGTAACA TCCGTTATGCCTGACCGATTCTGGTCTCCTGGCCCGGAACCTGTCCAAGTCAAGAATCCATTCACTCAGTTATCTGGCCGAGACAGTCAGAAGCCCCGAG CCATCGCATCGGAGCCGAAGTTTTCAGCCCAGTGCTCCAAGAACAATGGCTTCTCCGGCAATGAAGAGCGATCTCAGAGGAAAAGTACAACTAAACCTGC TGCTACTTCCCATTTCACCGGTAATCCTGTCTCGACTCTCCCTTGGTTTACCCCGGCCCCGATTCCAAAGCCCGCAATCGATCCTCACTTCCAAGCTCCT AGCTCTATCCTTGCTCCTCATTTTCGAGCTCCTGGCTCCAAGCATTATGAGCAGAGTAATGTTAAGTCGGAGGCGGATCAGTATGCTTATGATATCTGGG GGGATCACTTGCCGGGTCTGCATTTAGTTGAGAGCTCGAAAGGTGCTAGGAGTCGTCCGAGTAGCTTAGCAGTGGAGACGAGTCAGAGTAGCTTCTTTGT AAGGGGTCCTCAGACCCTGATGAAAAAGTCTCCTCTGCAGTCTACTCTGCCACTCAGTTCAACGGTCCGACCAGTTGTACTGATTGGTACAGATTTCCTC ATACCGCAACGTCTGGGCTATCTGGTTTGTGGTCGGGTCTGA
AA sequence Show only first row Show all	>Lus10002968 pacid=23142137 polypeptide=Lus10002968 locus=Lus10002968.g ID=Lus10002968.BGIv1.0 annot-version=v1.0 MSTLMDSDASYSAPPQLNRRLRYHRQLELEEKTIRRKNFVPSTCCFRGAFKSGHELNVILVLLCTFLLLVRCEPCMLNGNAIEKAEHVGCGSFADDRVEG TVVDDMHSGLDAGSAMGSENSGYVCTNAHSFCFLSTLTGYLREEDKVREVEPSNYQSGCPLSLELNQRSSLAINKSWLPDDGSFEFMNGRTVFCSLNSLI DQKKSSSSASCGESMDGSKFRLNKQLELTESVPSGVGPSPGIEVSHSSLDWGRKYLYSPSVVFLTVANTCNDSVLHVYEPFSTNMQFYPCNFSEVLLGPG EVASLCFIFLPRWLGLSSAHLILQTSSGGFVIQAKGYGVESPYAISRLTSINVPSSGELRKNLSIFNPFNEPIVVKEVSALVSISLGNISHQSEATCSLG NFKSSNNLSLLNAKDWLTVQNGQATGFPLLSLRPHENWEVAPNERGEIVELDFSFGSEGRVFGAFCMHLLRPSQNESEAIVIPLEAARSGGRAHDNAFNL ISVSLEALPCYACKTPVVAISLFNGAHYMLNVVKISEVGSRIFQIKYSEGLLLFPGSSTQVALVGCPQPPYELCDSEPENCNLIILTNDSSTRIEVPGQD IIYICSKHQKDSSIGYHNDFVGADDHNQGSRSFEAGMQGYKELKLPETAEADEFVLDNWKSHITASGVSVISDQEMIFPVLEVGDHFSQWISVKNPSDQP VVVQLILNSAEIVDKCTPAGNIASPAAGSFIPNGIGTSRYGFSLAKTAITEAYLHPYSDEAFLGPIVFHPSNRCTWSSSALIRTNLSGVEWFSLRGVGGS LSLETVANIEFHLNLPLPLNTSSSYMLFQMEETYQACCSPLKKELSLKNTGDLPLHVKDIKVSGKECSSDGFLVHPCAGFTLDPGESTKLKVSYQTDLSG TSVHRDLELTLVGGNFVIPMKATLPVYAFNLCKKSVFLVRLKKFFVAVFFVASAVSVVLYYVQHQGTNFGSRDDGVLKTERSVEKSSRVRRSDKNIKFSA AIDMDHLGLVGEGKSLKWESLERNYDDGEENRAVVQNMKPTRPSIVEESEPDKLSVNIGKEKGRRRRKRKGVVGGIVGRFEVSSSQSGNSTPSSPLSPVT SVMPDRFWSPGPEPVQVKNPFTQLSGRDSQKPRAIASEPKFSAQCSKNNGFSGNEERSQRKSTTKPAATSHFTGNPVSTLPWFTPAPIPKPAIDPHFQAP SSILAPHFRAPGSKHYEQSNVKSEADQYAYDIWGDHLPGLHLVESSKGARSRPSSLAVETSQSSFFVRGPQTLMKKSPLQSTLPLSSTVRPVVLIGTDFL IPQRLGYLVCGRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66820			unknown protein		Lus10002968 [exp]	0	1
AT5G66820			unknown protein		Lus10009344 [exp]	1.0	0.8980
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007931 [exp]	3.2	0.8748
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	4.2	0.8133
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	8.2	0.8374
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	8.7	0.8624
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	9.8	0.7760
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	10.1	0.7216
					Lus10011573 [exp]	11.5	0.8128
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	13.6	0.8103
AT3G12915			Ribosomal protein S5/Elongatio...		Lus10031779 [exp]	14.0	0.8319

Compare expression of checked genes

Lus10002968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.