Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50620 451 / 1e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G15730 438 / 2e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 436 / 1e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009348 [exp] 644 / 0 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027910 [exp] 404 / 1e-141 AT2G15730 507 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012072 [exp] 399 / 7e-140 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 380 / 2e-132 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 379 / 3e-132 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042100 [exp] 508 / 0 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 490 / 8e-176 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G105200 [exp] 437 / 7e-155 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 436 / 2e-154 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 425 / 6e-150 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10002971 pacid=23142131 polypeptide=Lus10002971 locus=Lus10002971.g ID=Lus10002971.BGIv1.0 annot-version=v1.0 ATGTTATTGAGGATGGTGGTTCTAATGTTTGCCATGGCCTTTGGTGTGTACATCTGCACCATTTGCCTACACCAAATAACCACACGTAGCAAAGTCAAGA TACAAGACATACAAGTGATCGAGAGGCCATCAGCTGGCGGTGGTGATGATGATCTGTTTCAAGTGCCTAAGCTGCATTACCCTAATCCGAAAAGTTTCAG CAGGGAGGAATGTGTCGATAATCCTGTACGATACTTTGCGATTGTGTCGACTCAAAGATCAGGTAGTGGATGGTTTGAGACCTTGTTGAACAGTCACGTT AATGTGAGTTCGAACGGGGAGATCTTCTCTGTTCTGGACAGGAGAAGAAACATCTCTGCCATTGTTCAGACTCTGGATAAGGTTTACAATCTGGACTGGT TCTCCAGCGCTTCGAAGAATGAATGCTCTGGTGCTGTTGGATTCAAGTGGATGCTTAATCAGGGATTGATGGAGCAGCACGAAGAAATAGCGGAATATCT GAATCGCAGGGGAGTGTCCTTAGTATTTATGTTCCGAAGAAACCTACTCCGGAGAATGGTGTCCCTCCTCGCAAACTCTTACGACAAGTCCGCAAAGTTA CTCAACGGAACCCACAAGTCTCATGTTCATACTGCCGAAGAGGCAGAAATGCTATCCAAGTATAAGCCGACGGTTAACTCCACATTGCTCGTAGCCAATC TACGGAAAGCAGATGACATGGTCACCGCGGCCCTCAAACACTACAACACGACAAGGCACATTGTTGTCTACTACGAGGATCTCGTCAAAGACAGCAAAAA ACTGGAGGAAGTGCAGGAGTTTCTGAGGCTACCTGTGAGGAAACTGAGAAGCCGGCAGGTGAAGATCCACAAGGGACCATTGTCAGAGCTGATCGAGAAC TGGGAAGATGTGAACAAGACGCTGAACGGAACAGAATTCGAGGATTTTCTCCGAGCCGACTATTGA
AA sequence Show only first row Show all	>Lus10002971 pacid=23142131 polypeptide=Lus10002971 locus=Lus10002971.g ID=Lus10002971.BGIv1.0 annot-version=v1.0 MLLRMVVLMFAMAFGVYICTICLHQITTRSKVKIQDIQVIERPSAGGGDDDLFQVPKLHYPNPKSFSREECVDNPVRYFAIVSTQRSGSGWFETLLNSHV NVSSNGEIFSVLDRRRNISAIVQTLDKVYNLDWFSSASKNECSGAVGFKWMLNQGLMEQHEEIAEYLNRRGVSLVFMFRRNLLRRMVSLLANSYDKSAKL LNGTHKSHVHTAEEAEMLSKYKPTVNSTLLVANLRKADDMVTAALKHYNTTRHIVVYYEDLVKDSKKLEEVQEFLRLPVRKLRSRQVKIHKGPLSELIEN WEDVNKTLNGTEFEDFLRADY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	0	1
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	1.0	0.8473
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	2.2	0.8335
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	4.7	0.8373
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	4.9	0.8249
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	12.2	0.8081
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	16.2	0.8349
AT5G66600			Protein of unknown function, D...		Lus10022480 [exp]	26.3	0.7850
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	29.5	0.7269
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	31.3	0.8194
AT5G59830			unknown protein		Lus10024426 [exp]	38.0	0.7564

Compare expression of checked genes

Lus10002971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.