Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12810 119 / 4e-29 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007172 [exp] 485 / 2e-174 AT3G12810 116 / 6e-29 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G022100 [exp] 157 / 2e-42 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.001G207700 [exp] 156 / 4e-42 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002973 pacid=23140452 polypeptide=Lus10002973 locus=Lus10002973.g ID=Lus10002973.BGIv1.0 annot-version=v1.0 ATGAAGTTTTTCGCTGTCTCACTTATATGTAGTTGTTTAAATTTCATTACTTGTAAAATTTGCTTTAATATAGCTTACTATTTCCCTTGGGTTTCTTTGT TTCGTGTGGAAGAAATTATTGACCAGTTACTTGATGGATTCAGTGCGAACTCTGATGTTCAGTGTGTGAAATGGCAGGATAATGTTCGTTTGCTTTTGAA TGTTGCTGCTGAGCAGCCAGATCATGAATTGCTTCTTCAGAGACATTTCACTGCTCTCCTTTCTTCAGTCTGGAAAGCAGCGTGCCACAATAGCAGTTGT TTTGGTGAAAAATCTATAAATTGTGTTAGTCAGACATCTCAGCGTTCTGTTAATGGATTTCACAGAAGATTGTGGTCGACTAATACAAGGCACTCTGGTA AGTTGGTGGCTGCTGCACTACGAGATGTCAGTAGCAGAAGGACAGATGATGGAGTCTCGGTTTCCATTGCAAAGGAAGGAGTTTCTGCTACTGACAGGCT GGAATTAACTCTGGAATTCCAGGGGGGGAACAATGCTGAGTTTGTATTCCCACCCTTGGTGATTTTGTCCATTCTAGTGGGGTCAGATAGGCAGACATGT ATGATGAAGGAGGCAGAAGAAGTTCATCTCAGAAGTAGCACAGTTTTGGCAGAGACGCGCTATCGGGATGGTTGGAAAGTTGGGACTGCAGATATTCCTG TTTCAGCAAATGACTCCAAGTTACGACCAGCTCTTAAATTGCACTCTTCTGGAAAGCAAAGATTCAGTGCTTCGGACACTGTAAGGGTTCCCAGGTCAAA GCTAAAGAAAGCATCAACAGAGCAGAGTGAGACGATGAACAACCCTTTCGCCAATGCTGTGTTCAAGACAATGTTGGGAGCTTGGAATTCTGCTTATTCT GATTTTGAAAACGAACCTGTTTGTTCCATAGGCAGAGATGTTTTACTGGAAAGTGAAAGTGAAAGTTTCGAGTCTGTTTTACCTCATGTATATGTTGCTG GTTTGATTACGGACCTAGTTTAG
AA sequence Show only first row Show all	>Lus10002973 pacid=23140452 polypeptide=Lus10002973 locus=Lus10002973.g ID=Lus10002973.BGIv1.0 annot-version=v1.0 MKFFAVSLICSCLNFITCKICFNIAYYFPWVSLFRVEEIIDQLLDGFSANSDVQCVKWQDNVRLLLNVAAEQPDHELLLQRHFTALLSSVWKAACHNSSC FGEKSINCVSQTSQRSVNGFHRRLWSTNTRHSGKLVAAALRDVSSRRTDDGVSVSIAKEGVSATDRLELTLEFQGGNNAEFVFPPLVILSILVGSDRQTC MMKEAEEVHLRSSTVLAETRYRDGWKVGTADIPVSANDSKLRPALKLHSSGKQRFSASDTVRVPRSKLKKASTEQSETMNNPFANAVFKTMLGAWNSAYS DFENEPVCSIGRDVLLESESESFESVLPHVYVAGLITDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002973 [exp]	0	1
AT3G49490			unknown protein		Lus10015581 [exp]	10.2	0.7719
AT2G26920			Ubiquitin-associated/translati...		Lus10041640 [exp]	27.6	0.7139
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	28.4	0.7343
AT1G01770			unknown protein		Lus10014782 [exp]	48.2	0.6983
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10034965 [exp]	60.4	0.6478
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	81.6	0.6627
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	94.2	0.6755
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	98.8	0.6416
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	109.8	0.6449
					Lus10039535 [exp]	129.0	0.5990

Compare expression of checked genes

Lus10002973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.