Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12810 902 / 0 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT3G57300 293 / 2e-80 ATINO80 INO80 ortholog (.1.2) AT3G06400 258 / 2e-70 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 256 / 1e-69 CHR17 chromatin remodeling factor17 (.1.2) AT3G06010 243 / 2e-65 ATCHR12 Homeotic gene regulator (.1) AT5G19310 236 / 2e-63 Homeotic gene regulator (.1) AT5G66750 222 / 5e-60 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G28290 216 / 4e-56 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G46020 213 / 4e-55 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT2G13370 199 / 4e-51 CHR5 chromatin remodeling 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007173 [exp] 912 / 0 AT3G12810 668 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10007174 [exp] 459 / 1e-148 AT3G12810 281 / 2e-85 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10031050 [exp] 294 / 2e-80 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10033967 [exp] 248 / 8e-66 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10024019 [exp] 234 / 2e-63 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041735 [exp] 233 / 2e-63 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10010522 [exp] 231 / 2e-61 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 230 / 3e-61 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10036371 [exp] 216 / 4e-56 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207700 [exp] 999 / 0 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 931 / 0 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.016G043500 [exp] 296 / 4e-81 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.006G047100 [exp] 293 / 3e-80 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.010G021400 [exp] 257 / 5e-70 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 253 / 8e-69 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G091200 [exp] 244 / 9e-66 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 241 / 2e-64 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.019G129900 [exp] 224 / 7e-61 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 221 / 6e-60 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF07529 [flax] [poplar] HSA HSA
Representative CDS sequence Show only first row Show all	>Lus10002974 pacid=23140454 polypeptide=Lus10002974 locus=Lus10002974.g ID=Lus10002974.BGIv1.0 annot-version=v1.0 ATGGCGTCCAAAGGTCCAAGGTCCAAGCTTGATCATGAAACCAGAGCTCGCCGCCAAAAGGCGTTTGAAGCTCCTAGGGAACCTCCCCGCCCAAAAGTTC ACTGGGACCATGTTTTAGAAGAGATGATTTGGCTTTCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAAGTCAGGCAAAAAAAGTTGCTTTAAGAGC CAGCAAGGGTATGCTGGATCAGGCTACCCGCGGAGAAAAGAAATTGAAGGATGAGGAGCAACGAATGCGAAAAGTTGCACTTAATATTTCGAAGGATGTC AAGAAGTTCTGGATCAAAATCGAGAAGCTGGCAAGTTTGTTCTTTGGTCTTTTTAATTTTCACGATCTCCCATTATCTGATAAAGTACTTGAAACTGAGG AAATTATGTGTACCTATTGCAGGTACTCAACTATGTTAGCAGAAAATCTGGTGGACAGACCTTCACAGTTGATGCTGGATCAATCTGGTGCTCCATCCGC GACAGAGGAGAAGATTACCCCAACTCCTCCGGATCTTAACAATGAGCCTCAACTGGATGCTGTTGAAGATGGTGACGGTGATTATGACGTACATTCTGAG GACAGTTCTGAAGATGATGAGCATACTATTGAAGAAGATGAGGCTCTGTTTACAGAAGAAGAGCGGCAAGAAGAATTGGCTGCTTTGAAAAATGAGGTTG ATCTTCCAGTTGAGGATCTACTCAAGCGTTATACTTCAGATAGAGATGGTAGAGAAAGCAATGCTGGCGAGGAAAAATCTGGTAACATATCTACTGTGAA AGGGAAAGTTGACGGCAAAAAATGTGTTCATTTGTTTGGTGGTGAAAGTGATGCAAGTAGCTTAGGTGCTGTGACTTGTCGTCGTTGTTTGGAGACTGGT GTAAAATCCGGGTCAGCCAATAATCCTTCAGAGATTGAGACTCGTGATACCAGAAATGGTTTGAGTATGTATTGTGATCAGGGCGAGGAGGATTTGGCAT ATGATTTCAATGATGAACAGGAGGATGGAGACTTTCTTCTTGCCACTGCAGACGATAATGATGATGATGAGGCAACTTTGTTGGAGGAAGAGGAACTGGC AAAAACAGATGCAAGTGACCCTGTCGATGAGGTTTACATAAATCCTAAGAGCCCTGAGTTGCAATTACGTTGTTCTCAGATTTCATTATTGCAAAAGGAA AGTGAAATTCCACTAGAAGAATTGATTGCTAGGTATAAAAAGGATTACAACAGTGATAACATTTCCGAGGCCGACTCTGGATATACTTCTGCCTTGTACG AGAGCCCGTCTGATGCTCCTGATAAAGTAGATGTTGGACCAGAACAGGACCAATTGATTGTTGAAACTGTTAAGCCATCTGATAAGGTGCCTATTGTGTA TCCTTTTTTAAAGGAGCAAGTGGTTAGTGGTGAAGTTGCTGAACAAGAAAAGGATAGTGAGGATCGGATTACTGATGCAGCTGCTGCTGCTAGGTCTGCA CAACCAACAGGGAATACCTTTCTAACAACCAAAGTGCGGACAAAATTCCCTTTTCTCCTGAAATACCCTCTTCGTGAGTATCAGCATATTGGTCTTGATT GGCTTGTCACTATGTACGAGAAGAGGTTGAATGGGATTCTTGCTGATGAAATGGGGCTTGGGAAGACAATCATGACTATTGCTTTGCTTGCACACCTAGC ATGTGAGAAGGGAATATGGGGTCCACATCTCATTGTGGTTCCAACAAGTGTTATGCTCAATTGGGAAACTGAGTTTCTTAAATGGTGTCCAGCGTTCAAG ATTCTAACTTACTTTGGTAGTGCAAAGGAACGGAAGTTAAAGAGGCAAGGGTGGTTGAAAGCAAACTCATTTCACATCTGCATAACGACTTACAGACTGG TAATACAGGATGCAAAAATCTTCAAGAGGAAGAAGTGGAAATATTTGATTTTGGATGAAGCTCATTTGATAAAAAATTGGAAATCACAAAGATGGCAGAC GCTTCTGAACTTCAATTCTAAACGACGAATTCTATTGACTGGCACACCACTGCAAAATGACCTGATGGAATTATGGTCCTTAATGCATTTCTTAATGCCT CACATCTTTCAGTCTCATCAGGAATTCAAAGATTGGTTCAGTAATCCCATATCTGGGATGGTTGAAGGACAAGAAAGAGTAAACAAAGAGGTTCTGGATC GCTTGCATAATGTTCTTCGTCCATTTATACTACGTCGGTTGAAAAGAGATGTCGAGAAGCAGCTACCGATGAAACATGAGCACGTTGTCTTTTGTAGACT TTCTAAGAGGCAGCGAAACTTGTATGAAGACTTCATTGCTAGCTCTGAGACACAAGCTACACTCGCCATGTTAGATACCATAGAAAGTATTACTTGTGGA TCTAGAGGGAGGAGAACATTGCCTGGATCAAGTATATTTGAAGAGATTCGAAAGGCCTTATTGGAGGAAAGATTGAAAGAAGCAAAAGAACGGGCAGCAG CTATTGGATGGTGGAATTCATTAAGGTGCAGTAGGAAACCTATGTATTCAACTACTCTACGGGAAATTGCCACTATAAAGCGCAATGTTGACGATATTCA GCAGCGGAAGGTTAACAGACGCTCATACATGTATTCTTCTGCGCTTGCTGATATGGTTCTTTGTCCAATTGAACGACTCCAGAGAATGATAGATCTTGTG GAGTCCTTTATGTTTTCAATACCAGCTGCCCGTGCCCCAGTGCCTAATTGTTGGTGCAGTAAGAGAGGATCTCCTGTATTCGTGACTCCTATTTACAGGG ATAGAAGTTCTGAAATGTTGTTGCCTCTTCTTTCCCCAGTCAGGCCTGCAATCGTCCGGAGACAAGTTTATTTTCCAGATAGGAGGTTGATACAATTTGA CTGTGGGAAATTGCAGGAGCTTGCAGTTCTTCTCAGGAGATTGAAATCAGAAGGTCATCGAGCACTAATATTTACCCAGATGACAAAGATGCTTGATGTC CTGGAGGCTTTTATAAATTTGTATGGTTACACATACATGCGTTTGGATGGTTCCACCCAACCAGAGGAGAGGCAAACTTCAATGCAGCGTTTCAATACAA ATCCCAAAATTTTCCTTTTTATTTTGTCAACCCGTAGCGGTGGTGTTGGAATAAATCTTGTTGGTGCTGATACAGTTATCTTCTACGACAGTGACTGGAA TCCTGCTATGGACCAACAGGCTCAAGATCGCTGCCATAGAATAGGACAAACACGGGAAGTGAATATTTACAGGTTAATTAGTGACAGCACTATTGAGGAA AATATTTTAAAGAAGGCTAATCAGAAGCGTGCTCTCGATGATCTGGTTATTCAGAGTGGTGGATACAACACTGAATTTTTCAGGAAGCTTGATCCAATGG AGTTGTTCTCTGGTCATAAAACCCTTCCAGTAAAAAACACGCAGAATGAAAAGAAAAATAGTGAGGAAAATGAGGTTTCCTTGTCTAATGCAGATGTTGA AGCTGCCATTAAATATGCCGAAGATGAAGCAGATTACATGGCACTGAAAATGGTTGAGCAGGAAGAGGAGGTGCACAACCAGGAGTTCACTGAGGACGTA ATTGGGAGACTTGAGGATGATGAATGCGTTGAGGAGGATGATGTTAAGGTTGATGAGCAAGGGGAGCAAGAGAATTCATCGTCAGAGGGAGACTATAGGG GCAATTTAAATGACAGCAATAGCGTTGAAGAGAAAGCTCTCATTAAAGCTGCCAATGAAGATGATGGTCACATGCTTGCTGATGTTAGACAGATGGCTGA AGCAGCAGCTGCTGCTGGACAAGCTATTTCATCATTTGAAACTCATTTGCGCCCAATTGACAGATATGCCATTCGGTTCTTAGAATTTTGGGATCCAATA GTAGACAAAGCAGCCATAGATACTCAAGATCACCTTGAGGAGAGGGAATGGGAACTTGATCGTATTGAGAAGTACAAGGAGGAAATGGAAGCTGAGATTG ACGATGATGAAGAACCACTTGTATACGAAAGTTGGGATGCTGATTTTGCAACTGAAGCATATCGCCATCAAGTTCAGGTGTTAGCTCAACAGCAGTTGAT GGAGGAATTGGAAGCCGAAGCGAAACAGAAGCAAGATATAATTGATGAAGAATGTGAAACTACCATGGAAGGAATGCAAACAAATTCAAAACCAAAGTCA AAGAAGAAATTAAAAAAGACAAAATTCAAATCCTTGAAGAAGGGTTCTTTGTCTTCTGAGTTGCAACATGTGAAAAAGGAACCATCAATCGAAACTTTTT CCTCAGATGATGATTTGATTGATGAGGACGAGTTAACAAACCCAGGTATGGTGTCATCTTGTTCAAGTGCACAGAAAAAGCGCAAGAAAGCTGAAACAGT AATTGACGTTTGGAAGAGCTCAAGTAAGAAGTCGAAGAAACTGAAGAAGGCCCCTGAAGTATCCCCGTCAGGACTGAATACCAAACAGTCTGGAAAGAAG TACGATGATTTCATGGAGCTGAAATATTGTGAGAACAAAGTTACTGATCTGGAGCCAAAGCTGGCTAGTAGGAGCAAAATGGGAGGAAAGGTTTCTATAA CAACCATGCCAGTGAAGCGCATCTTAATGATAAAGCCGGAGAAAATAAAAAGAGGCAATGTATGGTCAAGAGATTGTGTTCCCTCACCTGATTCTTGGCT GCCACAAGAGGATGCAATATTGTGTGCTGTTGTACAAGAATATGGACCAAATTGGAGTTTGGTCAGCGACACATTGTATGGTATGACCGCTGGTGGGTTT TACCGCGGTAGATATCGCCATCCAGTTCATTGTTGTGAGAGATACCGGGAATTAATCCAAAAGCATATTCTATCGGCACCCGAGAATCCTGTTAGTGAAA GGATGAACAATGTGGGTTCAGGGAAGGGCCTACTCAAAATAACAGAGGTATGTCTTGATTTCCTATGGTAA
AA sequence Show only first row Show all	>Lus10002974 pacid=23140454 polypeptide=Lus10002974 locus=Lus10002974.g ID=Lus10002974.BGIv1.0 annot-version=v1.0 MASKGPRSKLDHETRARRQKAFEAPREPPRPKVHWDHVLEEMIWLSKDFESERKWKLSQAKKVALRASKGMLDQATRGEKKLKDEEQRMRKVALNISKDV KKFWIKIEKLASLFFGLFNFHDLPLSDKVLETEEIMCTYCRYSTMLAENLVDRPSQLMLDQSGAPSATEEKITPTPPDLNNEPQLDAVEDGDGDYDVHSE DSSEDDEHTIEEDEALFTEEERQEELAALKNEVDLPVEDLLKRYTSDRDGRESNAGEEKSGNISTVKGKVDGKKCVHLFGGESDASSLGAVTCRRCLETG VKSGSANNPSEIETRDTRNGLSMYCDQGEEDLAYDFNDEQEDGDFLLATADDNDDDEATLLEEEELAKTDASDPVDEVYINPKSPELQLRCSQISLLQKE SEIPLEELIARYKKDYNSDNISEADSGYTSALYESPSDAPDKVDVGPEQDQLIVETVKPSDKVPIVYPFLKEQVVSGEVAEQEKDSEDRITDAAAAARSA QPTGNTFLTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFK ILTYFGSAKERKLKRQGWLKANSFHICITTYRLVIQDAKIFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMP HIFQSHQEFKDWFSNPISGMVEGQERVNKEVLDRLHNVLRPFILRRLKRDVEKQLPMKHEHVVFCRLSKRQRNLYEDFIASSETQATLAMLDTIESITCG SRGRRTLPGSSIFEEIRKALLEERLKEAKERAAAIGWWNSLRCSRKPMYSTTLREIATIKRNVDDIQQRKVNRRSYMYSSALADMVLCPIERLQRMIDLV ESFMFSIPAARAPVPNCWCSKRGSPVFVTPIYRDRSSEMLLPLLSPVRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDV LEAFINLYGYTYMRLDGSTQPEERQTSMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVNIYRLISDSTIEE NILKKANQKRALDDLVIQSGGYNTEFFRKLDPMELFSGHKTLPVKNTQNEKKNSEENEVSLSNADVEAAIKYAEDEADYMALKMVEQEEEVHNQEFTEDV IGRLEDDECVEEDDVKVDEQGEQENSSSEGDYRGNLNDSNSVEEKALIKAANEDDGHMLADVRQMAEAAAAAGQAISSFETHLRPIDRYAIRFLEFWDPI VDKAAIDTQDHLEEREWELDRIEKYKEEMEAEIDDDEEPLVYESWDADFATEAYRHQVQVLAQQQLMEELEAEAKQKQDIIDEECETTMEGMQTNSKPKS KKKLKKTKFKSLKKGSLSSELQHVKKEPSIETFSSDDDLIDEDELTNPGMVSSCSSAQKKRKKAETVIDVWKSSSKKSKKLKKAPEVSPSGLNTKQSGKK YDDFMELKYCENKVTDLEPKLASRSKMGGKVSITTMPVKRILMIKPEKIKRGNVWSRDCVPSPDSWLPQEDAILCAVVQEYGPNWSLVSDTLYGMTAGGF YRGRYRHPVHCCERYRELIQKHILSAPENPVSERMNNVGSGKGLLKITEVCLDFLW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	0	1
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	1.7	0.9790
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	2.8	0.9778
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	2.8	0.9653
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	2.8	0.9744
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	3.0	0.9769
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	4.5	0.9728
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	4.6	0.9671
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	4.9	0.9620
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007173 [exp]	5.4	0.9513
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	6.5	0.9581

Compare expression of checked genes

Lus10002974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.