Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020595 [exp] 186 / 4e-56 ND / Lus10020961 [exp] 127 / 9e-32 ND / Lus10003899 [exp] 96 / 3e-22 ND / Lus10039373 [exp] 83 / 6e-19 ND / Lus10012614 [exp] 80 / 8e-18 ND / Lus10011759 [exp] 72 / 8e-14 ND / Lus10029540 [exp] 71 / 3e-13 ND / Lus10009729 [exp] 69 / 5e-13 ND / Lus10015601 [exp] 66 / 5e-12 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002975 pacid=23140455 polypeptide=Lus10002975 locus=Lus10002975.g ID=Lus10002975.BGIv1.0 annot-version=v1.0 ATGGTCGCTGATATTGGTGTGACTGATCGTGAGGCATATCTTGATTGTTGTTTGGTGTTCCGATTGTCTGGGGCCTCTCTCTCAGCGGCGGACTGGCTCC TCTTTTACGATTGGGCTCAGAAAACTTGGGGAGTGCTCATAGAGGACATAATTATTTTGGAGGATGGGCTATGGATGGTTAAGCTTCCGACGAAAGACGA TATCTCAAGAATCATGAATATCAGAAGATGGAAATTTAGAGATAGAAATATTGCTGCTGATGGATGGTGCAAGTGGGCTGGACGGTCGAACATAGAAGCT AAGGCGGGTTTGGTTTGGCTAAGGATTATTGGCTTGCCACTACATTTGCGCTCGTCTTCCTTATTTAGACAGCTGGGAAATTGTTGCGGCAATTTTCTCG AATACAACTTGGAGGGATGTTCCTACAACACAGTTAGGGTGAAGGTTAAGGCTTTGAATACTATCCCATGTCGAATCCCTGTAACCTTCAATGGAGACTG CTTCTCCGTGCAGGTGGTGGTTGAAAGCGGAGATGATTTCATCGACGGTTGGAAAGGTACATGCCCAGATGTGTATGTGCGATATCTGGCAAGTCGAACA AGGTGGACGGGTTTGGGTCGATTGGTTGATGGGCTGAAAGGCGTAGAAACGGCTCAAGCAACAGATGGTGGGATGGGAAAGAGCGCCGAAATGACAGAAG GTGACCACTCAAAGACACAGATGGAAGTAATTAGAGCCTCCGAGTTTGAGGACATGCGTTTGAAGATTGACAGTGAGAAAATCTCTGACACAGATCTTGA AGAAGGCGAGTTTATACAAAGTGAAAAAGTTGGAGAAGCCTTTTACTCAGAAGGGAAAGTTTCAGTCTCTATGAAGGTGGCTGGTGAGGTGCGGAACAAA GCGGACAGAGAAAGGTCTATGGATGGGGCCACCACGGCAAGGGTGGAAGATCTTCTTGTGGTAGATGGAGTTCTTAAAGATAATGGGCCAACTGAGCATG TGCACAGTCCGATTGGGCCTGCCTCAGAAGCTGAAAGGCTGCAATTTTGGCCTTTCTCTCGAAGAGATCCATCTCAGTCAAAAGAGACTTTAGATTTGGG CTTCAGTATTGGGCTTTGCTCTGAAAAGGCTGTTGGTAATGAGTGGGCCGCAGGAAAGTTTTGA
AA sequence Show only first row Show all	>Lus10002975 pacid=23140455 polypeptide=Lus10002975 locus=Lus10002975.g ID=Lus10002975.BGIv1.0 annot-version=v1.0 MVADIGVTDREAYLDCCLVFRLSGASLSAADWLLFYDWAQKTWGVLIEDIIILEDGLWMVKLPTKDDISRIMNIRRWKFRDRNIAADGWCKWAGRSNIEA KAGLVWLRIIGLPLHLRSSSLFRQLGNCCGNFLEYNLEGCSYNTVRVKVKALNTIPCRIPVTFNGDCFSVQVVVESGDDFIDGWKGTCPDVYVRYLASRT RWTGLGRLVDGLKGVETAQATDGGMGKSAEMTEGDHSKTQMEVIRASEFEDMRLKIDSEKISDTDLEEGEFIQSEKVGEAFYSEGKVSVSMKVAGEVRNK ADRERSMDGATTARVEDLLVVDGVLKDNGPTEHVHSPIGPASEAERLQFWPFSRRDPSQSKETLDLGFSIGLCSEKAVGNEWAAGKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002975 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	1.7	0.8266
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	2.8	0.7846
					Lus10026794 [exp]	10.6	0.7772
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	23.2	0.7878
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	28.8	0.7454
AT3G07510			unknown protein		Lus10025856 [exp]	30.2	0.7368
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	37.5	0.7823
AT5G57510			unknown protein		Lus10026228 [exp]	38.7	0.7808
AT2G36220			unknown protein		Lus10022709 [exp]	53.8	0.7239
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	58.0	0.7380

Compare expression of checked genes

Lus10002975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.