Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26450 429 / 3e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 398 / 2e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 377 / 1e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 375 / 7e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 358 / 3e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 347 / 3e-113 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 337 / 3e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 325 / 7e-105 RHS12 root hair specific 12 (.1) AT1G53830 325 / 2e-104 ATPME2 pectin methylesterase 2 (.1) AT5G04960 323 / 1e-103 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003968 [exp] 425 / 2e-143 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 424 / 3e-143 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 408 / 3e-136 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 395 / 8e-131 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 349 / 5e-116 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 349 / 5e-114 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033466 [exp] 347 / 1e-112 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 341 / 9e-111 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10006940 [exp] 340 / 3e-110 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209000 [exp] 501 / 1e-173 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 498 / 4e-172 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 435 / 7e-147 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 431 / 7e-146 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 429 / 3e-145 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 426 / 1e-143 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 385 / 6e-128 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 364 / 1e-119 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 353 / 3e-115 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.013G013400 [exp] 350 / 3e-114 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10002976 pacid=23140453 polypeptide=Lus10002976 locus=Lus10002976.g ID=Lus10002976.BGIv1.0 annot-version=v1.0 ATGTACTTAAAAATCAGCTCAGCACTAGTATTGTCCCTAATTCTCATAAACACATCCAATACCCTGGCTACAGGATACAAGTATAACAGCACCAAGTCGA AAACAATAACTCAAATCTGCGCCTCCGCCGATTACAAGCAGGCTTGCCACAGGACCCTACATACAGTGAAGAAAGCGGATGATCCCAAGGAATTCATCAA AGCTGCCATATTTGCCACTACGGAAGCCGCAAAGAGATCCTTCAACCTCTCCGCGTCTCTATTGCACAAGATTCGCCATGAAAATGCAGCAACCAGTACC AATTACACGAGGATGGCATTGGAAGATTGTAAAGATCTCCTAGGGGACTCCGTTTTCGAGCTTCAAGAGTCTCTTTCCTTATTAGGAAACATGAGCATAA GCAAAAAAGGACATGTGGTCTCGGAGCTACAGAACTGGCTAAGCGCTGTGGTTTCATATCAGCAGACCTGCCTCGATCAATTTGGAGAGGACAACAATTT GTACAAGTCGATTATGAAATCCGGGATAGAGAAAGCAACACAATTGACGAGCAATGCTCTCGCCATTGTTAATGACATTCCGGTACCAAGAGGTCGAAAA TTGCTGGCAGATCCAACGGGGACGTCGTCTCAAAGGCGTAGGAGGGTGCTGGCAAGATATTGGGATGGGAGTTTGGATCCGGATGTGGTTGTGGCGCAGG ATGGGAGCGGGGATTTCAGGACCATTTCAGATGCTCTGACTGCTTATAAGGATCCAGTTGCAACTGGAAATGGAGGATTATTTGTGATTTATGTCAAGGC AGGGGTCTACAAGGAATACGTTACTGTTGGGAAGAAGCACCGCAATGTATTCATGTATGGAGATGGAGCCCAACACACTATTGTTACTGGAGATAGATGC AACCGCCAGGGCTACCGGACAATGAAAACGGCCACATTTGAGGCGTTGGGATCAGGTTTTATAGCAAAGTCAATGTGCTTCAGGAACACAGCAGGGCCAG AAGGGTACCAAGCAGTGGCTCTCCGCGTCCAAGGAGATAAATCGGCTTTCATAGACTGTGCAATCAACGCCTACCAAGACTCCCTCTACTGCCACGCTCA TCGTCAGTTCTACTATAACTGCATCATCTCCGGCACTATCGATTTCATTTTCGGCGACGCCTCTGCTGTTATTCAAAACTCACTAATCATCCTGCATCGT CCCATGCCCAATCAAAGGAACACAATAATCGCCCAAGGACGAGTAATCAGACACCAGACAACCGGGATTGTTATCCAGAATTGTAGGATCGGATCAGAGT TCGGGGCGCCTCTTTCGTACCTCGGCCGCCCATGGAAGGCCTACTCCAGGGCTGTGGTCATGGAGTCAGAGATCGGAGGCGTCATCCATCCTCAAGGGTG GATGCCTTGGGATGGGGATCTCTACCTAGACACTTTGTTGTTCGCTGAATACAGAAATCGCGGCGCCGGAGCCATAACCACTGGGAGGGTGAATTGGAAG GGATTTGAAGTGATTGGGAAGAACGATGCGGTTCAGTACACCCCAGGCGAATTTATCCAGGGAGTGGAGTGGCTCATGGATCTTAGTACTAGTGGGATTT CTCTGGGTTTTACAGATTAA
AA sequence Show only first row Show all	>Lus10002976 pacid=23140453 polypeptide=Lus10002976 locus=Lus10002976.g ID=Lus10002976.BGIv1.0 annot-version=v1.0 MYLKISSALVLSLILINTSNTLATGYKYNSTKSKTITQICASADYKQACHRTLHTVKKADDPKEFIKAAIFATTEAAKRSFNLSASLLHKIRHENAATST NYTRMALEDCKDLLGDSVFELQESLSLLGNMSISKKGHVVSELQNWLSAVVSYQQTCLDQFGEDNNLYKSIMKSGIEKATQLTSNALAIVNDIPVPRGRK LLADPTGTSSQRRRRVLARYWDGSLDPDVVVAQDGSGDFRTISDALTAYKDPVATGNGGLFVIYVKAGVYKEYVTVGKKHRNVFMYGDGAQHTIVTGDRC NRQGYRTMKTATFEALGSGFIAKSMCFRNTAGPEGYQAVALRVQGDKSAFIDCAINAYQDSLYCHAHRQFYYNCIISGTIDFIFGDASAVIQNSLIILHR PMPNQRNTIIAQGRVIRHQTTGIVIQNCRIGSEFGAPLSYLGRPWKAYSRAVVMESEIGGVIHPQGWMPWDGDLYLDTLLFAEYRNRGAGAITTGRVNWK GFEVIGKNDAVQYTPGEFIQGVEWLMDLSTSGISLGFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	0	1
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	8.2	0.8164
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	16.6	0.8008
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	21.0	0.7901
AT1G77450	NAC	ANAC032	NAC domain containing protein ...		Lus10031937 [exp]	21.7	0.7685
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10005978 [exp]	23.0	0.7502
					Lus10001533 [exp]	23.7	0.7832
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000129 [exp]	27.1	0.7010
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	29.8	0.7561
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	31.5	0.6570
					Lus10034954 [exp]	33.2	0.7316

Compare expression of checked genes

Lus10002976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.