Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11400 69 / 3e-14 PYM partner of Y14-MAGO (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007180 [exp] 224 / 3e-74 AT1G11400 202 / 8e-66 partner of Y14-MAGO (.1.2.3) Lus10027682 [exp] 92 / 4e-23 AT1G48120 45 / 4e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10003832 [exp] 92 / 6e-22 ND / Lus10036342 [exp] 87 / 2e-21 ND 43 / 2e-05 Lus10021615 [exp] 87 / 4e-21 ND 41 / 1e-04 Lus10033204 [exp] 89 / 5e-21 AT2G25010 50 / 4e-07 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004836 [exp] 87 / 7e-21 ND / Lus10007996 [exp] 86 / 1e-20 ND / Lus10008152 [exp] 85 / 1e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021500 [exp] 107 / 3e-28 AT1G11400 153 / 1e-46 partner of Y14-MAGO (.1.2.3) Potri.001G209100 [exp] 92 / 1e-22 AT1G11400 181 / 4e-57 partner of Y14-MAGO (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002977 pacid=23140456 polypeptide=Lus10002977 locus=Lus10002977.g ID=Lus10002977.BGIv1.0 annot-version=v1.0 ATGGAGTATGTAGTCAAGCACTCCATGTGTGACTACAACTGGATTGGACATTTGATGGCTTTGTCATTCTTCAGCACTTGCAGTGTACCAGGATCGCCTG ACGGTAACGTGACTGCTGAGTACATGGCGTGGTACCTCGATTGCACACACCCAACAATCGTCCCCACGCCCGCAGCAGATGAACCACTTCTAATGTTGTT GAAGAAGGAGATGGAATCACAGGTTTTTGTACCTCCGGGTTATGATCCAGCTCTAGATACAATACCGAAGTCAAAGTCAGCCAAGAGGAATGAAAGGAAG AAGGAAAAGCGCCTTCAGGCTGCTATTGAGAATGGCAATAACTCTGAAGATGTGAATGTGGACTCGGATGAAGTGCAGGCTAATAGAGATTTAGGCCATA CGTCCAAATCTTTTGAAGCATTGACATCTCAGATAAATGATATGACTGTTTCGTCGAAGTCTATCGAAATGATTCCTCCTGTAGCCTCAGTAGAAGGTTC ATGTCTAGGGGATGGTGGCCAAGATATTGATAAAAAAATCCGAGCTCTCAAAAAGAAGATTAGGTTGGCTGAAGCTCAGCAGCAGAAAAATGCAACAAAG GAGTTGAAAGCAGAACAGAGGGAGAAGATGAGAAAGTTGGAAGGTTGGCGCGAGGAGCTAAAGCTTCTGGAATTGAAAAGGAGTAAACAGGGGGCATCAT CATCATCATAA
AA sequence Show only first row Show all	>Lus10002977 pacid=23140456 polypeptide=Lus10002977 locus=Lus10002977.g ID=Lus10002977.BGIv1.0 annot-version=v1.0 MEYVVKHSMCDYNWIGHLMALSFFSTCSVPGSPDGNVTAEYMAWYLDCTHPTIVPTPAADEPLLMLLKKEMESQVFVPPGYDPALDTIPKSKSAKRNERK KEKRLQAAIENGNNSEDVNVDSDEVQANRDLGHTSKSFEALTSQINDMTVSSKSIEMIPPVASVEGSCLGDGGQDIDKKIRALKKKIRLAEAQQQKNATK ELKAEQREKMRKLEGWREELKLLELKRSKQGASSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10002977 [exp]	0	1
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	3.2	0.9348
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	4.7	0.9328
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	7.2	0.9215
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	8.5	0.9209
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	8.7	0.9213
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Lus10018927 [exp]	10.0	0.9011
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	10.2	0.9122
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	10.6	0.9199
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	13.0	0.9131
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	13.3	0.9246

Compare expression of checked genes

Lus10002977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.