Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60490 201 / 1e-64 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 184 / 9e-58 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT1G03870 121 / 2e-33 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 121 / 3e-33 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G20520 119 / 1e-32 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 96 / 2e-23 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 68 / 5e-13 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G45470 67 / 1e-12 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 66 / 3e-12 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G55730 55 / 1e-08 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036111 [exp] 327 / 4e-114 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036112 [exp] 202 / 1e-64 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 200 / 8e-64 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036113 [exp] 196 / 6e-62 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 195 / 7e-62 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 190 / 7e-60 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 183 / 2e-57 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 180 / 2e-56 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036115 [exp] 165 / 2e-50 AT5G03170 151 / 4e-45 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G129400 [exp] 257 / 1e-86 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G127900 [exp] 256 / 2e-86 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.004G210600 [exp] 221 / 3e-72 AT5G60490 188 / 5e-59 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.009G012200 [exp] 212 / 1e-68 AT5G60490 167 / 5e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G013300 [exp] 207 / 8e-67 AT5G60490 176 / 3e-54 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 207 / 1e-66 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 206 / 2e-66 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 205 / 8e-66 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 205 / 1e-65 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 204 / 1e-65 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10002978 pacid=23176897 polypeptide=Lus10002978 locus=Lus10002978.g ID=Lus10002978.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAATGTCATGATCTCCTTTTCACTCCTCTTCGTCCTCCTCATCATCGAAAGCTGCTCTGCCCAGTCCCCGGCTGCGGCGCCAGCACCTC CAGGCCCAGTCAACATTACCAAAGTCCTCGAAAAAGCAGGCCAATTCAGCGTCTTCATCAGGCTACTCAGGGCTACCCGAGAAGACCTCACCTTGAACGG TCAGCTCAACAATTCCAATAATGCTGTCACCATCTTTGTCCCCAGCGACAGTGCATTCACAAGCTTGAAATCTGGAACCCTCAATGCCTTAAACGATCAG GAGAAATCTGAGCTCATCCAGTTCCACATCATTCCGATGTACCTTTCCTCCTCTACCTTCCAGACCGTCAGCAACCCAGTCACCACCCAGGCCGGAACCG GCAACAGGCTGGCTCTCAACGTCACCACGTCCGGAAATTCCGTCAACATAACCACGGGGATGACCAACACAAGCGTGTCGGGCACTGTTTACACTGACGG GCAGCTGGCTGTGTACCAGGTTGACCAGGTACTGCTCCCGGTTGACCTGTTTACTCCGAAGCCGCCGGCACCGGCCCCTGCGCCGGAGAAGGCGAAGAAG AAGAAGAAGGCGGAGGAAGATGCAGCGGACGGTCCTGGGGGAGTGGCCAAGGATAAGTCCGGTGGAGGGAGATTTGTGGTTATGAATTGGTGGCCAGTGT TTGGGGTTGGGCTCTCTGTTTTAGCGATGCCGTTGTGA
AA sequence Show only first row Show all	>Lus10002978 pacid=23176897 polypeptide=Lus10002978 locus=Lus10002978.g ID=Lus10002978.BGIv1.0 annot-version=v1.0 MAPPNVMISFSLLFVLLIIESCSAQSPAAAPAPPGPVNITKVLEKAGQFSVFIRLLRATREDLTLNGQLNNSNNAVTIFVPSDSAFTSLKSGTLNALNDQ EKSELIQFHIIPMYLSSSTFQTVSNPVTTQAGTGNRLALNVTTSGNSVNITTGMTNTSVSGTVYTDGQLAVYQVDQVLLPVDLFTPKPPAPAPAPEKAKK KKKAEEDAADGPGGVAKDKSGGGRFVVMNWWPVFGVGLSVLAMPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	0	1
AT1G32770	NAC	NST3, ANAC012, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10001664 [exp]	1.7	0.9862
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10019929 [exp]	1.7	0.9877
AT3G13130			unknown protein		Lus10016611 [exp]	2.0	0.9869
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10034289 [exp]	3.5	0.9850
AT2G43630			unknown protein		Lus10002105 [exp]	3.6	0.9587
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10026499 [exp]	4.2	0.9803
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	4.5	0.9811
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	6.3	0.9637
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10017340 [exp]	7.5	0.9701
AT1G21510			unknown protein		Lus10028651 [exp]	9.0	0.9666

Compare expression of checked genes

Lus10002978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.