Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 197 / 1e-63 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004350 [exp] 236 / 7e-79 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10028931 [exp] 60 / 3e-12 AT4G17260 88 / 1e-21 Lactate/malate dehydrogenase family protein (.1) Lus10006030 [exp] 0 / 1 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111201 [exp] 199 / 3e-65 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1) Potri.001G122400 [exp] 201 / 7e-65 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 89 / 2e-22 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002982 pacid=23176900 polypeptide=Lus10002982 locus=Lus10002982.g ID=Lus10002982.BGIv1.0 annot-version=v1.0 ATGATCGCTGACCATCTCGACGTCAACGCCCAGGACGTCCAGGTGTACATAGTGGGGGAGCGCGGTGACATCTCGGTGGCGCTGTGGTCGAGCATAAGCG TGGGGGAAGTCCCGATAATGAGCTTCTTGGAGCAGCAACAGATACCATTGGAGAAGGATACGCCGGAGAACATCCACAAAGAGGTGGTACATAGCGCCTA CGCGGTTACAAACTTGAAATGGTACACTTCGTGGGCGATTGGGTACTCGGCTGCGAATTTGGCGAGGTCGATACTGAGGAACCAGAGGAGGATCCACCCT GTGACGGTTCTGGCTAAAGGGTTCTACGGGATTGAAGGTGGGGAGGTGTTCTTGAGCCGACCGGCTCTACTGGGGAGCGTTGGGGCTGTCTGTAACTAA
AA sequence Show only first row Show all	>Lus10002982 pacid=23176900 polypeptide=Lus10002982 locus=Lus10002982.g ID=Lus10002982.BGIv1.0 annot-version=v1.0 MIADHLDVNAQDVQVYIVGERGDISVALWSSISVGEVPIMSFLEQQQIPLEKDTPENIHKEVVHSAYAVTNLKWYTSWAIGYSAANLARSILRNQRRIHP VTVLAKGFYGIEGGEVFLSRPALLGSVGAVCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17260			Lactate/malate dehydrogenase f...		Lus10002982 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Lus10002983 [exp]	3.6	0.8485
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	14.0	0.8700
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	28.3	0.8540
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	36.3	0.8558
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015509 [exp]	38.1	0.8579
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	39.5	0.8534
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	39.8	0.8567
AT3G10260			Reticulon family protein (.1.2...		Lus10020718 [exp]	47.6	0.8350
AT1G11340			S-locus lectin protein kinase ...		Lus10034637 [exp]	52.8	0.7985
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	72.4	0.8029

Compare expression of checked genes

Lus10002982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.