Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 151 / 2e-45 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004350 [exp] 237 / 5e-79 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10028931 [exp] 153 / 6e-49 AT4G17260 88 / 1e-21 Lactate/malate dehydrogenase family protein (.1) Lus10006030 [exp] 103 / 6e-27 AT4G17260 124 / 9e-32 Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G122400 [exp] 171 / 4e-53 AT4G17260 545 / 0.0 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 164 / 7e-52 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.003G111201 [exp] 76 / 4e-17 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10002983 pacid=23176898 polypeptide=Lus10002983 locus=Lus10002983.g ID=Lus10002983.BGIv1.0 annot-version=v1.0 ATGCACAATACGCCTTCAGGTTCAGTACTGGGCGGCCCCGACGACCTAGACATAACCCAAACATTTTTCAAACCCATCCAGAGAACCGACTCGCTCTACT CATCCAAGCGCTACATCACCAAGATCTCTGTCATCGGCGTCGGAAACGTTGGCATGGCCATCGCCCAGACCATCCTCACCCAGGAACTCGCCGACGAGAT CGCCCTTGTCGACGCTAACCACGACAAGCTTCGCGGCGAGATGCTTGACCTCCAGCACGCCGCCGCATTTCCCCCACGCACCAAGATCCTCACCACCACC GACTCCTCCGTCACCGCCGGATCCGACCTCTGCATCGTCACCGCCGGCGCCCGCCAGAACCCTGGCGAGTCCAGGCTCAACCTCCTCAGCGAAACATCAC CATCTTCAAGTCGATCATCCCTTTCTTAG
AA sequence Show only first row Show all	>Lus10002983 pacid=23176898 polypeptide=Lus10002983 locus=Lus10002983.g ID=Lus10002983.BGIv1.0 annot-version=v1.0 MHNTPSGSVLGGPDDLDITQTFFKPIQRTDSLYSSKRYITKISVIGVGNVGMAIAQTILTQELADEIALVDANHDKLRGEMLDLQHAAAFPPRTKILTTT DSSVTAGSDLCIVTAGARQNPGESRLNLLSETSPSSSRSSLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17260			Lactate/malate dehydrogenase f...		Lus10002983 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Lus10002982 [exp]	3.6	0.8485
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	21.5	0.7475
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	30.8	0.7400
					Lus10037168 [exp]	32.2	0.7619
					Lus10006216 [exp]	42.8	0.7429
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	80.4	0.7137
AT3G12960			unknown protein		Lus10011871 [exp]	111.9	0.6851
					Lus10029831 [exp]	120.6	0.7051
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	193.5	0.6769
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	223.9	0.6749

Compare expression of checked genes

Lus10002983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.