Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03170 174 / 1e-53 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 173 / 2e-53 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G44130 114 / 1e-30 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 110 / 4e-29 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 105 / 3e-27 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 84 / 4e-19 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 71 / 6e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G12730 61 / 1e-10 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 58 / 2e-09 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 56 / 7e-09 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036112 [exp] 350 / 1e-122 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002979 [exp] 256 / 2e-86 AT5G60490 143 / 1e-42 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10002978 [exp] 198 / 4e-63 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 196 / 3e-62 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 182 / 1e-56 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 182 / 1e-56 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10036114 [exp] 174 / 3e-53 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 160 / 2e-48 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10019929 [exp] 160 / 2e-48 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G014200 [exp] 219 / 3e-71 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 213 / 1e-68 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.013G151500 [exp] 213 / 1e-68 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151366 [exp] 212 / 3e-68 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 211 / 6e-68 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 211 / 6e-68 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 210 / 6e-68 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G123200 [exp] 209 / 3e-67 AT5G60490 165 / 4e-50 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121200 [exp] 207 / 3e-66 AT5G03170 166 / 2e-50 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.012G127900 [exp] 205 / 7e-66 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10002984 pacid=23176894 polypeptide=Lus10002984 locus=Lus10002984.g ID=Lus10002984.BGIv1.0 annot-version=v1.0 ATGGACAAATTCATCTGCCTCATCATCTTCTGCCTACTCAACATGGCCACAGCACAATCCCCAGCATCATCCCCAACAAAATCCCTACCAGCAATAACAA AGCCACCGGTTTCCTCCCCGACTCAGCTTCCAGCCGCTTCCCCATCTCCAACCAACGTGACAAAAGTACTTGAAAAACCAGGACACTTCAACATCTTCAT TCGCCTCCTTAGAGCTACACAAGAAGACAACCACTTGCTTACCCTCCTCAATAACTCCAACAATGGCGCCACCATCTTTGCACCAACTGATTCTGCTTTC TCCTCCCTCAAATCCGGAACTCTCAACGCTTTATCCGACGACGCTAAATCCGAGCTTGTCAAATTCCATGTCATACCCACCTTCATCTCCTCTTCTCAAT TTCAGACTGTCAGTAACCCGATTGCTACAGAGGCAGGTTCCGGCGGCCGCGTTTCACTTAATGTCACGTCTTATGGCGATTCTGTCAACATCAGCACCGG CCTCACTAACACAAGCATCTCCGGGAATGTCTACTCTGACGATCAGTTGGCTGTTTATAAGTTGGACAAGGTGTTGCTCCCCTTTGCCGCCAAGCCAATT GCTCCGGCTCCGGCACCGGCAGCATTGGAGAAGCCCAATAAGAAGAAGAGCCCCCCTGTTGTTGAGCAACAGGGTAGCTCCCCTATTGTTCAGGTGGACA CGTCGGGGAGTTGTACAATTTGGGCGGAGAAGGTGAATGCGGCTTGTAGCACTATCGGAATAGCTATTGCTACCGCGTTTCTTATATGA
AA sequence Show only first row Show all	>Lus10002984 pacid=23176894 polypeptide=Lus10002984 locus=Lus10002984.g ID=Lus10002984.BGIv1.0 annot-version=v1.0 MDKFICLIIFCLLNMATAQSPASSPTKSLPAITKPPVSSPTQLPAASPSPTNVTKVLEKPGHFNIFIRLLRATQEDNHLLTLLNNSNNGATIFAPTDSAF SSLKSGTLNALSDDAKSELVKFHVIPTFISSSQFQTVSNPIATEAGSGGRVSLNVTSYGDSVNISTGLTNTSISGNVYSDDQLAVYKLDKVLLPFAAKPI APAPAPAALEKPNKKKSPPVVEQQGSSPIVQVDTSGSCTIWAEKVNAACSTIGIAIATAFLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002984 [exp]	0	1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036113 [exp]	1.4	0.9725
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036112 [exp]	2.4	0.9637
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10002985 [exp]	3.0	0.9379
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	4.9	0.9216
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	5.3	0.9359
AT2G36640		ATECP63	embryonic cell protein 63 (.1)		Lus10035586 [exp]	5.3	0.8882
AT5G44670			Domain of unknown function (DU...		Lus10036247 [exp]	6.3	0.9329
AT5G24600			Protein of unknown function, D...		Lus10032916 [exp]	7.1	0.9087
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020100 [exp]	7.5	0.9115
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	9.5	0.8846

Compare expression of checked genes

Lus10002984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.